miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19019 3' -54.3 NC_004684.1 + 56527 0.66 0.840547
Target:  5'- cGGUGAggUCGAGuucuccgagcguuUCGUCCAaCugGUCa -3'
miRNA:   3'- aCCACU--AGCUU-------------AGCGGGUcGugCAGc -5'
19019 3' -54.3 NC_004684.1 + 25650 0.66 0.836192
Target:  5'- gGGUGuaGUUGGAcCGCCCGGUgaucuggaugaagucGCGUCc -3'
miRNA:   3'- aCCAC--UAGCUUaGCGGGUCG---------------UGCAGc -5'
19019 3' -54.3 NC_004684.1 + 19333 0.66 0.832671
Target:  5'- cGGUGGUCGAAacCGCCauccGCAUG-CGc -3'
miRNA:   3'- aCCACUAGCUUa-GCGGgu--CGUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 37724 0.66 0.832671
Target:  5'- cGGUcuGGUCGGccgCGCgCaggAGCACGUCGu -3'
miRNA:   3'- aCCA--CUAGCUua-GCGgG---UCGUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 56769 0.66 0.83267
Target:  5'- gUGGUGA-CGA--CGCCgaCGGCugGUCc -3'
miRNA:   3'- -ACCACUaGCUuaGCGG--GUCGugCAGc -5'
19019 3' -54.3 NC_004684.1 + 64926 0.66 0.823724
Target:  5'- aGGUGGUaCGGcaCGCCgAGCugGcCGc -3'
miRNA:   3'- aCCACUA-GCUuaGCGGgUCGugCaGC- -5'
19019 3' -54.3 NC_004684.1 + 7654 0.66 0.823724
Target:  5'- gUGGUGAcCGggUCGgC-GGCcuACGUCGu -3'
miRNA:   3'- -ACCACUaGCuuAGCgGgUCG--UGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 1599 0.66 0.814581
Target:  5'- cGGUGcacggcAUCG-GUCGCCguGCGCG-CGc -3'
miRNA:   3'- aCCAC------UAGCuUAGCGGguCGUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 15735 0.66 0.814581
Target:  5'- -cGUGG-CGAGUUGCCCAGCgacuggccGCGUa- -3'
miRNA:   3'- acCACUaGCUUAGCGGGUCG--------UGCAgc -5'
19019 3' -54.3 NC_004684.1 + 20337 0.66 0.81458
Target:  5'- ---aGAUCGGcGUCGCCCGGUGCaccGUCa -3'
miRNA:   3'- accaCUAGCU-UAGCGGGUCGUG---CAGc -5'
19019 3' -54.3 NC_004684.1 + 40301 0.66 0.805249
Target:  5'- uUGGUG-UCGAuggcguagCGCCCGGCAgG-Ca -3'
miRNA:   3'- -ACCACuAGCUua------GCGGGUCGUgCaGc -5'
19019 3' -54.3 NC_004684.1 + 40716 0.66 0.805249
Target:  5'- cGGUGGcCGGGaCGaCCAGCGCGgCGg -3'
miRNA:   3'- aCCACUaGCUUaGCgGGUCGUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 61836 0.67 0.795742
Target:  5'- cGGUuuUCGuccUCGCgCAGCACGUUc -3'
miRNA:   3'- aCCAcuAGCuu-AGCGgGUCGUGCAGc -5'
19019 3' -54.3 NC_004684.1 + 24021 0.67 0.784113
Target:  5'- -cGUGAUCGGuuccggcaaggUGCCCGGCGCGg-- -3'
miRNA:   3'- acCACUAGCUua---------GCGGGUCGUGCagc -5'
19019 3' -54.3 NC_004684.1 + 55150 0.67 0.776236
Target:  5'- -cGUGAcCGGAUCGCCgccgucgggCGGCACGUa- -3'
miRNA:   3'- acCACUaGCUUAGCGG---------GUCGUGCAgc -5'
19019 3' -54.3 NC_004684.1 + 62928 0.67 0.766259
Target:  5'- cGGUGA-CGAAgcCGaCCAGCGCG-CGg -3'
miRNA:   3'- aCCACUaGCUUa-GCgGGUCGUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 53358 0.67 0.766259
Target:  5'- uUGcUGGUCGggUCGCCCuGgAUG-CGg -3'
miRNA:   3'- -ACcACUAGCuuAGCGGGuCgUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 2305 0.67 0.766259
Target:  5'- cGGUGc-UGAc-CGCCguGCACGUCGg -3'
miRNA:   3'- aCCACuaGCUuaGCGGguCGUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 38489 0.67 0.756149
Target:  5'- cGGUcGAUCagcggcGGUCGCCaCGGCGCGcCGu -3'
miRNA:   3'- aCCA-CUAGc-----UUAGCGG-GUCGUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 66248 0.67 0.756149
Target:  5'- ---cGGUCGGcaCGCCCGGCAUGcCGu -3'
miRNA:   3'- accaCUAGCUuaGCGGGUCGUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.