miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19019 3' -54.3 NC_004684.1 + 7603 0.68 0.735565
Target:  5'- cGGUGGUCGuGUacuucauccggUGCCCguGGUGCGUCa -3'
miRNA:   3'- aCCACUAGCuUA-----------GCGGG--UCGUGCAGc -5'
19019 3' -54.3 NC_004684.1 + 40598 0.69 0.671733
Target:  5'- gUGGUGGUCagcaCGUCCAGCaccACGUUGa -3'
miRNA:   3'- -ACCACUAGcuuaGCGGGUCG---UGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 49909 0.69 0.671733
Target:  5'- aUGGUGAUCG---CGCCCAGgUugGaCGg -3'
miRNA:   3'- -ACCACUAGCuuaGCGGGUC-GugCaGC- -5'
19019 3' -54.3 NC_004684.1 + 45593 0.69 0.682525
Target:  5'- gGGUGGagcCGGAcagguccaGCaCCAGCGCGUCGg -3'
miRNA:   3'- aCCACUa--GCUUag------CG-GGUCGUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 66848 0.68 0.69327
Target:  5'- cGGUGGcggccUCGAc-CGCcuggCCAGCACGUCa -3'
miRNA:   3'- aCCACU-----AGCUuaGCG----GGUCGUGCAGc -5'
19019 3' -54.3 NC_004684.1 + 16027 0.68 0.714577
Target:  5'- gUGGUcGUUGAcgUGCCCGGCgACGaCGa -3'
miRNA:   3'- -ACCAcUAGCUuaGCGGGUCG-UGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 46358 0.68 0.734525
Target:  5'- gUGGUGGUCGucgUGCUCGGCcaucacgaugccgAUGUCGc -3'
miRNA:   3'- -ACCACUAGCuuaGCGGGUCG-------------UGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 45361 0.68 0.735565
Target:  5'- aGcGUGucCGAGUUGgCCAGCAgGUCGa -3'
miRNA:   3'- aC-CACuaGCUUAGCgGGUCGUgCAGC- -5'
19019 3' -54.3 NC_004684.1 + 10232 0.68 0.735565
Target:  5'- aGGUGcgCGAGcagcUgGCCguGCGCGUgGa -3'
miRNA:   3'- aCCACuaGCUU----AgCGGguCGUGCAgC- -5'
19019 3' -54.3 NC_004684.1 + 61597 0.69 0.660905
Target:  5'- cGGUGGUCGAGgcguccCGCCC-GCACa--- -3'
miRNA:   3'- aCCACUAGCUUa-----GCGGGuCGUGcagc -5'
19019 3' -54.3 NC_004684.1 + 13004 0.69 0.660905
Target:  5'- gGGUGGauuauguccccCGAcgCGCCCGGuUACGUCGc -3'
miRNA:   3'- aCCACUa----------GCUuaGCGGGUC-GUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 55447 0.7 0.606567
Target:  5'- cGGUGGUCuauGUCGCCaAGCGCGg-- -3'
miRNA:   3'- aCCACUAGcu-UAGCGGgUCGUGCagc -5'
19019 3' -54.3 NC_004684.1 + 64566 0.76 0.303823
Target:  5'- uUGGUGcgCaGGAUCguguaccgGCCCGGUACGUCGa -3'
miRNA:   3'- -ACCACuaG-CUUAG--------CGGGUCGUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 56352 0.74 0.375729
Target:  5'- gGGaGAUCGAccagcugAUCGCCCGGCAcCGcUCGg -3'
miRNA:   3'- aCCaCUAGCU-------UAGCGGGUCGU-GC-AGC- -5'
19019 3' -54.3 NC_004684.1 + 53771 0.74 0.376599
Target:  5'- aUGGUGGUCGggUCccagaCCGGCGCGgCGc -3'
miRNA:   3'- -ACCACUAGCuuAGcg---GGUCGUGCaGC- -5'
19019 3' -54.3 NC_004684.1 + 52616 0.74 0.403335
Target:  5'- aUGGUcaGGUCGG--UGCCgGGCACGUCGc -3'
miRNA:   3'- -ACCA--CUAGCUuaGCGGgUCGUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 2120 0.73 0.42557
Target:  5'- gGcGUGGUCGGAgcuggaccugcgugCGUUCGGCGCGUCGg -3'
miRNA:   3'- aC-CACUAGCUUa-------------GCGGGUCGUGCAGC- -5'
19019 3' -54.3 NC_004684.1 + 46404 0.72 0.510754
Target:  5'- gGGaUGGUCGggUccaCGgCCAGCAUGUCc -3'
miRNA:   3'- aCC-ACUAGCuuA---GCgGGUCGUGCAGc -5'
19019 3' -54.3 NC_004684.1 + 55036 0.71 0.563423
Target:  5'- aGGUGGUgCGcAGUgUGCCCAGCGCGg-- -3'
miRNA:   3'- aCCACUA-GC-UUA-GCGGGUCGUGCagc -5'
19019 3' -54.3 NC_004684.1 + 49225 0.7 0.584918
Target:  5'- cGGUGccgggccgggcGUCGGcacGUCGCCCcacagcGGCGCGUCc -3'
miRNA:   3'- aCCAC-----------UAGCU---UAGCGGG------UCGUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.