miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19019 5' -54.4 NC_004684.1 + 54196 0.65 0.823634
Target:  5'- aGGCGcaaaccgGCGGCCugcucggGGC-CGAGGUCGGccaGCa -3'
miRNA:   3'- -CCGU-------UGCCGG-------UCGcGUUUCAGCCa--UG- -5'
19019 5' -54.4 NC_004684.1 + 26614 0.66 0.81997
Target:  5'- cGGCGGCGucaucGCCaacgacaccgucGGCGCGGAGUUcuucggggugucggaGGUGCc -3'
miRNA:   3'- -CCGUUGC-----CGG------------UCGCGUUUCAG---------------CCAUG- -5'
19019 5' -54.4 NC_004684.1 + 1717 0.66 0.81997
Target:  5'- aGGCAcCGGCCAGUGCcgcgaccucaccaccAccGAGggCGGUccGCa -3'
miRNA:   3'- -CCGUuGCCGGUCGCG---------------U--UUCa-GCCA--UG- -5'
19019 5' -54.4 NC_004684.1 + 8925 0.66 0.816274
Target:  5'- cGGCAAguucgcgcUGGCCucAGCGgGcAGUCGGguccgGCa -3'
miRNA:   3'- -CCGUU--------GCCGG--UCGCgUuUCAGCCa----UG- -5'
19019 5' -54.4 NC_004684.1 + 20218 0.66 0.816274
Target:  5'- aGCGGCGGCCcuGGCcGCcgcuaCGGUGCu -3'
miRNA:   3'- cCGUUGCCGG--UCG-CGuuucaGCCAUG- -5'
19019 5' -54.4 NC_004684.1 + 47843 0.66 0.816274
Target:  5'- cGCcuGACGGCacgUAGCGCGAaccGGaggCGGUGCc -3'
miRNA:   3'- cCG--UUGCCG---GUCGCGUU---UCa--GCCAUG- -5'
19019 5' -54.4 NC_004684.1 + 65320 0.66 0.816274
Target:  5'- uGCAccACGGCCAGCGCcAGG-CaGGccACg -3'
miRNA:   3'- cCGU--UGCCGGUCGCGuUUCaG-CCa-UG- -5'
19019 5' -54.4 NC_004684.1 + 27177 0.66 0.816274
Target:  5'- cGGCGACcuGGCCacGGCGaucuuuGGcggCGGUGCg -3'
miRNA:   3'- -CCGUUG--CCGG--UCGCguu---UCa--GCCAUG- -5'
19019 5' -54.4 NC_004684.1 + 45247 0.66 0.816274
Target:  5'- aGGCccGGCaGCCAGCGCu-GGUCGcgGCc -3'
miRNA:   3'- -CCG--UUGcCGGUCGCGuuUCAGCcaUG- -5'
19019 5' -54.4 NC_004684.1 + 10073 0.66 0.815346
Target:  5'- uGGCcuACGGCCAGUcgaccggGCAGGGcuggccggGGUGCg -3'
miRNA:   3'- -CCGu-UGCCGGUCG-------CGUUUCag------CCAUG- -5'
19019 5' -54.4 NC_004684.1 + 65982 0.66 0.815346
Target:  5'- cGGCAGgccuccaggucgcUGGCCAGUGCAAcGG-CGGccuugGCg -3'
miRNA:   3'- -CCGUU-------------GCCGGUCGCGUU-UCaGCCa----UG- -5'
19019 5' -54.4 NC_004684.1 + 47596 0.66 0.806903
Target:  5'- cGGCGAUguaGGCCGcacacCGCc--GUCGGUACu -3'
miRNA:   3'- -CCGUUG---CCGGUc----GCGuuuCAGCCAUG- -5'
19019 5' -54.4 NC_004684.1 + 18950 0.66 0.806903
Target:  5'- aGCGGCGcaggauGCCAGCGCGGuGUCGa--- -3'
miRNA:   3'- cCGUUGC------CGGUCGCGUUuCAGCcaug -5'
19019 5' -54.4 NC_004684.1 + 46600 0.66 0.806903
Target:  5'- cGGCGACGG-CGGCGgu---UUGGUACg -3'
miRNA:   3'- -CCGUUGCCgGUCGCguuucAGCCAUG- -5'
19019 5' -54.4 NC_004684.1 + 63536 0.66 0.805956
Target:  5'- cGCAGCGGCgugccuuCGGUGUGGucGUCGGUcgGCa -3'
miRNA:   3'- cCGUUGCCG-------GUCGCGUUu-CAGCCA--UG- -5'
19019 5' -54.4 NC_004684.1 + 20628 0.66 0.801192
Target:  5'- cGGCGAgcGCCAGCGCGucgagcugaccccagAGGUcCGGcGCa -3'
miRNA:   3'- -CCGUUgcCGGUCGCGU---------------UUCA-GCCaUG- -5'
19019 5' -54.4 NC_004684.1 + 66310 0.66 0.79735
Target:  5'- cGGCAGCGGCgcguagUAGCGCucGAAcGUccCGGUGa -3'
miRNA:   3'- -CCGUUGCCG------GUCGCG--UUU-CA--GCCAUg -5'
19019 5' -54.4 NC_004684.1 + 48191 0.66 0.79735
Target:  5'- cGGCAGCGGCuCAGCaaGCu--GuUCGGa-- -3'
miRNA:   3'- -CCGUUGCCG-GUCG--CGuuuC-AGCCaug -5'
19019 5' -54.4 NC_004684.1 + 61163 0.66 0.79735
Target:  5'- cGGuCAGCcacccGGCCAGgucgGCGGGGUUGGUGg -3'
miRNA:   3'- -CC-GUUG-----CCGGUCg---CGUUUCAGCCAUg -5'
19019 5' -54.4 NC_004684.1 + 38234 0.66 0.79735
Target:  5'- aGCAAgccuguCGGCCAGCGCAu-GUcccCGGaGCu -3'
miRNA:   3'- cCGUU------GCCGGUCGCGUuuCA---GCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.