miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19020 3' -59.5 NC_004684.1 + 29041 0.66 0.572179
Target:  5'- gCAUUUCcaccCACCGGGGUGUGCagcugaACCAg -3'
miRNA:   3'- -GUGGAGcu--GUGGCUCCACGCGg-----UGGU- -5'
19020 3' -59.5 NC_004684.1 + 18461 0.66 0.572179
Target:  5'- gACgaCGGCACCGAgcuggugcugucGGUGUccggcaccGCCACCGc -3'
miRNA:   3'- gUGgaGCUGUGGCU------------CCACG--------CGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 20015 0.66 0.572179
Target:  5'- gCACCg-GAgGCCGuGGUGCcugaagaccccGCCAUCAg -3'
miRNA:   3'- -GUGGagCUgUGGCuCCACG-----------CGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 8316 0.66 0.572179
Target:  5'- gGCgCU-GACGCCggaaGAGGUGCG-CGCCAg -3'
miRNA:   3'- gUG-GAgCUGUGG----CUCCACGCgGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 63745 0.66 0.572179
Target:  5'- gACC-CGGCACCG-GGcG-GCCACUAg -3'
miRNA:   3'- gUGGaGCUGUGGCuCCaCgCGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 17010 0.66 0.572179
Target:  5'- cCGCCgacaugCG-CACCGAgcgGGUGaagaaCGCCGCCGa -3'
miRNA:   3'- -GUGGa-----GCuGUGGCU---CCAC-----GCGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 3616 0.66 0.572179
Target:  5'- cCGCCgaacacgaGugGCCGAaGcGCGCCACCu -3'
miRNA:   3'- -GUGGag------CugUGGCUcCaCGCGGUGGu -5'
19020 3' -59.5 NC_004684.1 + 23445 0.66 0.568015
Target:  5'- gGCCUCGACGgCGAGaccugggagccaaUGC-CCGCCAu -3'
miRNA:   3'- gUGGAGCUGUgGCUCc------------ACGcGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 57003 0.66 0.565936
Target:  5'- cCGCCggggacgagcgCGcCAUCGGGGUGCGCUggucggucacgguggGCCAc -3'
miRNA:   3'- -GUGGa----------GCuGUGGCUCCACGCGG---------------UGGU- -5'
19020 3' -59.5 NC_004684.1 + 61902 0.66 0.561783
Target:  5'- cCAUCUCGAacCACCucuaucgcGGGGUGCGggccacggcacCCGCCGg -3'
miRNA:   3'- -GUGGAGCU--GUGG--------CUCCACGC-----------GGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 26328 0.66 0.561783
Target:  5'- gGCCgcCGAuUGCCGAcgcGGUGCGCUcgGCCAu -3'
miRNA:   3'- gUGGa-GCU-GUGGCU---CCACGCGG--UGGU- -5'
19020 3' -59.5 NC_004684.1 + 30562 0.66 0.560746
Target:  5'- gCACCUCGACcucggugguggaGCUGgucuGGGUGUcguagcugaccgaGCCGCCGc -3'
miRNA:   3'- -GUGGAGCUG------------UGGC----UCCACG-------------CGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 50640 0.66 0.560746
Target:  5'- aACCagUCGACACCGccgucggGGGUGCGg-ACCAg -3'
miRNA:   3'- gUGG--AGCUGUGGC-------UCCACGCggUGGU- -5'
19020 3' -59.5 NC_004684.1 + 51350 0.66 0.560746
Target:  5'- cCGgCUCGAucugcgcccagucCACCGAGGUGagGCCuugGCCGu -3'
miRNA:   3'- -GUgGAGCU-------------GUGGCUCCACg-CGG---UGGU- -5'
19020 3' -59.5 NC_004684.1 + 43280 0.66 0.551438
Target:  5'- uGCgUCGGCguGCCGGGcUGCGgCACCu -3'
miRNA:   3'- gUGgAGCUG--UGGCUCcACGCgGUGGu -5'
19020 3' -59.5 NC_004684.1 + 11603 0.66 0.551438
Target:  5'- gCGCCUggacgaCGGCACCGAGcugGCcgucgGCCGCCu -3'
miRNA:   3'- -GUGGA------GCUGUGGCUCca-CG-----CGGUGGu -5'
19020 3' -59.5 NC_004684.1 + 58653 0.66 0.551438
Target:  5'- uCGCCgggcgCGGCGgCGAacaucGGgaucaGCGCCGCCAu -3'
miRNA:   3'- -GUGGa----GCUGUgGCU-----CCa----CGCGGUGGU- -5'
19020 3' -59.5 NC_004684.1 + 9373 0.66 0.551438
Target:  5'- aGCCg-GACACCGAGGacGaCGCCgguACCGa -3'
miRNA:   3'- gUGGagCUGUGGCUCCa-C-GCGG---UGGU- -5'
19020 3' -59.5 NC_004684.1 + 58033 0.66 0.550406
Target:  5'- cCAUUUCGccgaugaGCugCGucuGGUGCGCCACgAg -3'
miRNA:   3'- -GUGGAGC-------UGugGCu--CCACGCGGUGgU- -5'
19020 3' -59.5 NC_004684.1 + 17277 0.66 0.545258
Target:  5'- aCugCUCGGCggcgcugguuuucugGCCGGGGU-CGCgGCCc -3'
miRNA:   3'- -GugGAGCUG---------------UGGCUCCAcGCGgUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.