miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19020 5' -56.1 NC_004684.1 + 52939 0.66 0.741722
Target:  5'- --aGGCAGGCgcugcguucggucaCCACCUCGUUGAc-- -3'
miRNA:   3'- caaCCGUUCGa-------------GGUGGGGCAACUccc -5'
19020 5' -56.1 NC_004684.1 + 33727 0.66 0.737599
Target:  5'- -gUGGUGcacAGCgacgCCAUgCCCGgcGAGGGg -3'
miRNA:   3'- caACCGU---UCGa---GGUG-GGGCaaCUCCC- -5'
19020 5' -56.1 NC_004684.1 + 31400 0.66 0.727221
Target:  5'- --cGGCGGGCaCCACCCCGacugUGcgccAGGc -3'
miRNA:   3'- caaCCGUUCGaGGUGGGGCa---AC----UCCc -5'
19020 5' -56.1 NC_004684.1 + 54503 0.66 0.726178
Target:  5'- --cGGUAAGCUCgUACCgcgcucaCCGgcGGGGGu -3'
miRNA:   3'- caaCCGUUCGAG-GUGG-------GGCaaCUCCC- -5'
19020 5' -56.1 NC_004684.1 + 57068 0.66 0.69558
Target:  5'- -gUGGCAGGCaCCACCUgGaacGAGGu -3'
miRNA:   3'- caACCGUUCGaGGUGGGgCaa-CUCCc -5'
19020 5' -56.1 NC_004684.1 + 7963 0.66 0.694514
Target:  5'- --gGGC-AGCUCCACCCggacggaCGgcagGAGGa -3'
miRNA:   3'- caaCCGuUCGAGGUGGG-------GCaa--CUCCc -5'
19020 5' -56.1 NC_004684.1 + 14103 0.67 0.674171
Target:  5'- -gUGGUGuGGCUCaGCCCCGgUGGGuGGg -3'
miRNA:   3'- caACCGU-UCGAGgUGGGGCaACUC-CC- -5'
19020 5' -56.1 NC_004684.1 + 46712 0.67 0.630972
Target:  5'- -cUGuGCGAGCgcgCCACCgacauuaCGUUGAGGcGg -3'
miRNA:   3'- caAC-CGUUCGa--GGUGGg------GCAACUCC-C- -5'
19020 5' -56.1 NC_004684.1 + 31792 0.68 0.609339
Target:  5'- --cGcGCAAGgUCCAUUCCGUUGAcGGu -3'
miRNA:   3'- caaC-CGUUCgAGGUGGGGCAACUcCC- -5'
19020 5' -56.1 NC_004684.1 + 59883 0.68 0.577054
Target:  5'- --gGGCAGG-UCCACCCCGaUGcGGcGg -3'
miRNA:   3'- caaCCGUUCgAGGUGGGGCaACuCC-C- -5'
19020 5' -56.1 NC_004684.1 + 38423 0.7 0.463449
Target:  5'- --aGGCucAGCUCCACCUCGaagucgGAGGu -3'
miRNA:   3'- caaCCGu-UCGAGGUGGGGCaa----CUCCc -5'
19020 5' -56.1 NC_004684.1 + 39791 1.09 0.00102
Target:  5'- uGUUGGCAAGCUCCACCCCGUUGAGGGc -3'
miRNA:   3'- -CAACCGUUCGAGGUGGGGCAACUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.