miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19021 3' -65.2 NC_004684.1 + 9017 0.66 0.312505
Target:  5'- gCGCGgUGCCGugcGGGgCGGCaACCGGCGc -3'
miRNA:   3'- -GUGUgGCGGC---CCCgGCUGgUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 52603 0.66 0.312505
Target:  5'- gCGCGCCGCCGuaGuuGugCGCCaGUAc -3'
miRNA:   3'- -GUGUGGCGGCccCggCugGUGGcCGU- -5'
19021 3' -65.2 NC_004684.1 + 22508 0.66 0.312505
Target:  5'- cCACcugguuCCGuCCGGuGCgCGACC-CCGGCAu -3'
miRNA:   3'- -GUGu-----GGC-GGCCcCG-GCUGGuGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 16795 0.66 0.312505
Target:  5'- gAC-CCGCCGaccGCCGACCcgaCGGCAu -3'
miRNA:   3'- gUGuGGCGGCcc-CGGCUGGug-GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 13106 0.66 0.312505
Target:  5'- gCACGCCGCCcca-CCGGCCAgCgCGGCAg -3'
miRNA:   3'- -GUGUGGCGGccccGGCUGGU-G-GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 19628 0.66 0.312505
Target:  5'- aCGCACUaCCGGGGgCG-CguCCGGCc -3'
miRNA:   3'- -GUGUGGcGGCCCCgGCuGguGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 51490 0.66 0.310378
Target:  5'- gGCcuCUGCCGGGacGCCcugcggcugcacagGGCCGCUGGCGg -3'
miRNA:   3'- gUGu-GGCGGCCC--CGG--------------CUGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 41061 0.66 0.305457
Target:  5'- gCGCACCGCgucggcaauCGGcGGcCCGGCgGCCuGGCc -3'
miRNA:   3'- -GUGUGGCG---------GCC-CC-GGCUGgUGG-CCGu -5'
19021 3' -65.2 NC_004684.1 + 33664 0.66 0.305457
Target:  5'- cCGCGCUGCgucgaguaguuCGGGccaccGCCGcuGCCGCUGGCGa -3'
miRNA:   3'- -GUGUGGCG-----------GCCC-----CGGC--UGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 5686 0.66 0.305457
Target:  5'- ---gUgGCCGGGGcCCGGCCugcccaCGGCAc -3'
miRNA:   3'- guguGgCGGCCCC-GGCUGGug----GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 46744 0.66 0.305457
Target:  5'- uGCGCCGgaccuCUGGGGUcagcuCGACgCGCUGGCGc -3'
miRNA:   3'- gUGUGGC-----GGCCCCG-----GCUG-GUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 57525 0.66 0.304759
Target:  5'- gCGCGgCGUCGGGauCCGGCggcagcuCACCGGCGg -3'
miRNA:   3'- -GUGUgGCGGCCCc-GGCUG-------GUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 20029 0.66 0.301287
Target:  5'- cCACuACCGCCGGguccuaccguGGCCugguGGCCaugcucgacgcccacACCGGCGa -3'
miRNA:   3'- -GUG-UGGCGGCC----------CCGG----CUGG---------------UGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 62857 0.66 0.298531
Target:  5'- cCACAgCGCCGGGGUgauuUGAaCC-CCGGg- -3'
miRNA:   3'- -GUGUgGCGGCCCCG----GCU-GGuGGCCgu -5'
19021 3' -65.2 NC_004684.1 + 58110 0.66 0.298531
Target:  5'- aGCAUgGCCGGGuCCGcgaacaacGCgACCGGCu -3'
miRNA:   3'- gUGUGgCGGCCCcGGC--------UGgUGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 4010 0.66 0.297845
Target:  5'- cUACGCCGCCaucggcuGGcGcGUCGGCCGCuCGGUg -3'
miRNA:   3'- -GUGUGGCGG-------CC-C-CGGCUGGUG-GCCGu -5'
19021 3' -65.2 NC_004684.1 + 7540 0.66 0.294434
Target:  5'- cCugGCCGCCGuGG-CGGCguucugguucgccuaCACCGGCAc -3'
miRNA:   3'- -GugUGGCGGCcCCgGCUG---------------GUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 43370 0.66 0.291727
Target:  5'- gGCACCuuGCCGGaaCCGAUCACguCGGCGa -3'
miRNA:   3'- gUGUGG--CGGCCccGGCUGGUG--GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 54210 0.66 0.291727
Target:  5'- gGC-CUGCuCGGGGCCGAgguCgGCCaGCAg -3'
miRNA:   3'- gUGuGGCG-GCCCCGGCU---GgUGGcCGU- -5'
19021 3' -65.2 NC_004684.1 + 56886 0.66 0.291727
Target:  5'- cCugACCGUCGGcGGCCcaGugCGUCGGCc -3'
miRNA:   3'- -GugUGGCGGCC-CCGG--CugGUGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.