miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19022 3' -57.8 NC_004684.1 + 8684 0.66 0.611276
Target:  5'- gUGCcuguGGCCGUGcgUGAGGUCUGUu-- -3'
miRNA:   3'- -ACGu---CCGGCAUcaACUCCGGACGcac -5'
19022 3' -57.8 NC_004684.1 + 64482 0.66 0.611276
Target:  5'- aGCAGGCCGg---UGGuGGCCU-CGUu -3'
miRNA:   3'- aCGUCCGGCaucaACU-CCGGAcGCAc -5'
19022 3' -57.8 NC_004684.1 + 2979 0.66 0.600487
Target:  5'- gGguGGCCaacgGGUUGAGGCCaucaccGCGc- -3'
miRNA:   3'- aCguCCGGca--UCAACUCCGGa-----CGCac -5'
19022 3' -57.8 NC_004684.1 + 64879 0.66 0.578997
Target:  5'- cGCAGuGCCGggcgucGUUGAGGCC-GCc-- -3'
miRNA:   3'- aCGUC-CGGCau----CAACUCCGGaCGcac -5'
19022 3' -57.8 NC_004684.1 + 50436 0.66 0.578997
Target:  5'- gUGCAGGCCcgccUUGcAGGCCUcGCGg- -3'
miRNA:   3'- -ACGUCCGGcaucAAC-UCCGGA-CGCac -5'
19022 3' -57.8 NC_004684.1 + 5046 0.66 0.568311
Target:  5'- cGCAGGCUGgcgcgcgcuGUgcugGAGGCCUccgGCGaUGa -3'
miRNA:   3'- aCGUCCGGCau-------CAa---CUCCGGA---CGC-AC- -5'
19022 3' -57.8 NC_004684.1 + 59303 0.67 0.557676
Target:  5'- gGCAGGCCGguGUcGGGGUCgaugGCGcUGg -3'
miRNA:   3'- aCGUCCGGCauCAaCUCCGGa---CGC-AC- -5'
19022 3' -57.8 NC_004684.1 + 31401 0.67 0.547098
Target:  5'- gGCGGGCaccaccccgacUGUGcgccAGGCCUGCGUGg -3'
miRNA:   3'- aCGUCCG-----------GCAUcaacUCCGGACGCAC- -5'
19022 3' -57.8 NC_004684.1 + 42197 0.67 0.536584
Target:  5'- aGUGGGCCGUGGagcUGGuGGCC-GaCGUGg -3'
miRNA:   3'- aCGUCCGGCAUCa--ACU-CCGGaC-GCAC- -5'
19022 3' -57.8 NC_004684.1 + 54286 0.67 0.536584
Target:  5'- cGCuGGCCGg---UGGGGCg-GCGUGc -3'
miRNA:   3'- aCGuCCGGCaucaACUCCGgaCGCAC- -5'
19022 3' -57.8 NC_004684.1 + 37465 0.67 0.515777
Target:  5'- aGCGGGCCGcacagcgccguaUAG--GAGGCCU-CGUGu -3'
miRNA:   3'- aCGUCCGGC------------AUCaaCUCCGGAcGCAC- -5'
19022 3' -57.8 NC_004684.1 + 61176 0.68 0.495303
Target:  5'- gGcCAGGUCGgcggGGUUGGuGGCCUcgGCGUa -3'
miRNA:   3'- aC-GUCCGGCa---UCAACU-CCGGA--CGCAc -5'
19022 3' -57.8 NC_004684.1 + 18842 0.69 0.445848
Target:  5'- cGCAGGCCGaGGUguggcagGAGGUCgGCa-- -3'
miRNA:   3'- aCGUCCGGCaUCAa------CUCCGGaCGcac -5'
19022 3' -57.8 NC_004684.1 + 24500 0.69 0.436289
Target:  5'- aGguGGCgGUcucGGUgccaGAGGCCggGCGUGc -3'
miRNA:   3'- aCguCCGgCA---UCAa---CUCCGGa-CGCAC- -5'
19022 3' -57.8 NC_004684.1 + 15962 0.71 0.339544
Target:  5'- aUGCAGGCCuUGG-UGAGGCC-GUGa- -3'
miRNA:   3'- -ACGUCCGGcAUCaACUCCGGaCGCac -5'
19022 3' -57.8 NC_004684.1 + 2079 0.73 0.259331
Target:  5'- cGCuGGCCGUGGUgcacagcGAGGCCgccgucGCGUu -3'
miRNA:   3'- aCGuCCGGCAUCAa------CUCCGGa-----CGCAc -5'
19022 3' -57.8 NC_004684.1 + 261 0.75 0.175639
Target:  5'- gUGCAGGCCGacGgcGAGGCCUuCGUGc -3'
miRNA:   3'- -ACGUCCGGCauCaaCUCCGGAcGCAC- -5'
19022 3' -57.8 NC_004684.1 + 39243 1.07 0.000814
Target:  5'- uUGCAGGCCGUAGUUGAGGCCUGCGUGc -3'
miRNA:   3'- -ACGUCCGGCAUCAACUCCGGACGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.