miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19022 5' -57.9 NC_004684.1 + 64626 0.65 0.625702
Target:  5'- uCCAGCucguugccgucGGCgUCGuGgCGCACCGCg -3'
miRNA:   3'- uGGUCGuu---------CCGgAGCuUgGCGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 540 0.66 0.617071
Target:  5'- cCCGGCGaaAGGCCUgGAGg-GCACCGg -3'
miRNA:   3'- uGGUCGU--UCCGGAgCUUggCGUGGUg -5'
19022 5' -57.9 NC_004684.1 + 24761 0.66 0.617071
Target:  5'- uGCUGGCAGGGaagaC-CGGcACCGgGCCGCu -3'
miRNA:   3'- -UGGUCGUUCCg---GaGCU-UGGCgUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 24527 0.66 0.617071
Target:  5'- gGCguGCGGcGGCCUgGuugGCCcCACCGCg -3'
miRNA:   3'- -UGguCGUU-CCGGAgCu--UGGcGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 4482 0.66 0.617071
Target:  5'- cACCGGcCAGGGCCUgGcccGCCGUggcaACgGCa -3'
miRNA:   3'- -UGGUC-GUUCCGGAgCu--UGGCG----UGgUG- -5'
19022 5' -57.9 NC_004684.1 + 28558 0.66 0.617071
Target:  5'- cGCCAGgGccaccAGGCCgUCGGgcACCGCcaggcgggcaccGCCGCu -3'
miRNA:   3'- -UGGUCgU-----UCCGG-AGCU--UGGCG------------UGGUG- -5'
19022 5' -57.9 NC_004684.1 + 1720 0.66 0.617071
Target:  5'- cACCGGCcAGuGCCgCG-ACCuCACCACc -3'
miRNA:   3'- -UGGUCGuUC-CGGaGCuUGGcGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 4906 0.66 0.617071
Target:  5'- cGCCAcc--GGCCUCG-GCgGCACCAUc -3'
miRNA:   3'- -UGGUcguuCCGGAGCuUGgCGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 30892 0.66 0.617071
Target:  5'- gGCuCAGCGucccGGCCuugccgaugUCGAACCcgGUGCCGCa -3'
miRNA:   3'- -UG-GUCGUu---CCGG---------AGCUUGG--CGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 5256 0.66 0.617071
Target:  5'- gGCaCGGCGAGGCgUgcaaCGAguucACCGaCGCCAUg -3'
miRNA:   3'- -UG-GUCGUUCCGgA----GCU----UGGC-GUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 58390 0.66 0.617071
Target:  5'- cACCGcGCGuggAGGCCUUGGcCCG-GCCGCc -3'
miRNA:   3'- -UGGU-CGU---UCCGGAGCUuGGCgUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 66498 0.66 0.617071
Target:  5'- gGCCuuGGCGGcGGCCUCGcgGGCCGCcuucAgCGCg -3'
miRNA:   3'- -UGG--UCGUU-CCGGAGC--UUGGCG----UgGUG- -5'
19022 5' -57.9 NC_004684.1 + 57120 0.66 0.617071
Target:  5'- cACCGGCGucgcuGGCCaguuggUUGGcCCGCuCCACg -3'
miRNA:   3'- -UGGUCGUu----CCGG------AGCUuGGCGuGGUG- -5'
19022 5' -57.9 NC_004684.1 + 45685 0.66 0.617071
Target:  5'- gACCGGguAGGCC--GAGCCaugACCACg -3'
miRNA:   3'- -UGGUCguUCCGGagCUUGGcg-UGGUG- -5'
19022 5' -57.9 NC_004684.1 + 45375 0.66 0.615993
Target:  5'- gGCCAGCAGGucgaugcugaccaGCUccacCGGACCcuggcGCACCACc -3'
miRNA:   3'- -UGGUCGUUC-------------CGGa---GCUUGG-----CGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 26142 0.66 0.610604
Target:  5'- cACCAGCugGAGGCCUUcaaaGGuguACCaggccagcagcucgcGCACCGCu -3'
miRNA:   3'- -UGGUCG--UUCCGGAG----CU---UGG---------------CGUGGUG- -5'
19022 5' -57.9 NC_004684.1 + 37590 0.66 0.606295
Target:  5'- cCCGGCAucgguaccgugcGGGCC-CG-GCCGC-CCAUg -3'
miRNA:   3'- uGGUCGU------------UCCGGaGCuUGGCGuGGUG- -5'
19022 5' -57.9 NC_004684.1 + 15149 0.66 0.606295
Target:  5'- cGCCAGCGcgcagcuGGCC----GCCGCcGCCACg -3'
miRNA:   3'- -UGGUCGUu------CCGGagcuUGGCG-UGGUG- -5'
19022 5' -57.9 NC_004684.1 + 51761 0.66 0.606295
Target:  5'- uCCAGCAAcccGGCCUCGcGCgCGUugCc- -3'
miRNA:   3'- uGGUCGUU---CCGGAGCuUG-GCGugGug -5'
19022 5' -57.9 NC_004684.1 + 1746 0.66 0.606295
Target:  5'- gACCGGguAGGUCg-GGACCggaGCugCGCg -3'
miRNA:   3'- -UGGUCguUCCGGagCUUGG---CGugGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.