miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19023 5' -59.3 NC_004684.1 + 14349 0.66 0.582622
Target:  5'- -aCCgUGC-UGGGCACCGCGCaGGUGu -3'
miRNA:   3'- gaGG-ACGcACUCGUGGUGCGgUCGCc -5'
19023 5' -59.3 NC_004684.1 + 48676 0.66 0.582622
Target:  5'- aUCCaGCGaGAGCguGCCACcgGUCAGCGa -3'
miRNA:   3'- gAGGaCGCaCUCG--UGGUG--CGGUCGCc -5'
19023 5' -59.3 NC_004684.1 + 48951 0.66 0.57218
Target:  5'- gUCCUGCucGGGaGCCACGUCGGCc- -3'
miRNA:   3'- gAGGACGcaCUCgUGGUGCGGUCGcc -5'
19023 5' -59.3 NC_004684.1 + 51506 0.66 0.561783
Target:  5'- -cCCUGCGgcuGCACagggcCGCUGGCGGc -3'
miRNA:   3'- gaGGACGCacuCGUGgu---GCGGUCGCC- -5'
19023 5' -59.3 NC_004684.1 + 48638 0.66 0.561783
Target:  5'- uUCCcaggcccagaUGCGcu-GCACCGCGCCGGagaGGc -3'
miRNA:   3'- gAGG----------ACGCacuCGUGGUGCGGUCg--CC- -5'
19023 5' -59.3 NC_004684.1 + 18888 0.66 0.561783
Target:  5'- -aCCaGCGcG-GCuccuCCACGUCGGCGGg -3'
miRNA:   3'- gaGGaCGCaCuCGu---GGUGCGGUCGCC- -5'
19023 5' -59.3 NC_004684.1 + 62772 0.66 0.561783
Target:  5'- cCUCCUGCGgcgggcaggugaUGAGCAgguuUCGCGUCAcacCGGg -3'
miRNA:   3'- -GAGGACGC------------ACUCGU----GGUGCGGUc--GCC- -5'
19023 5' -59.3 NC_004684.1 + 2936 0.66 0.551438
Target:  5'- cCUCCgGUGccGAGCACCGagGCCAuCGGc -3'
miRNA:   3'- -GAGGaCGCa-CUCGUGGUg-CGGUcGCC- -5'
19023 5' -59.3 NC_004684.1 + 49022 0.66 0.551438
Target:  5'- -aCUUGCcgGUGAugucgagcgGCACCGCGCCGcCGGu -3'
miRNA:   3'- gaGGACG--CACU---------CGUGGUGCGGUcGCC- -5'
19023 5' -59.3 NC_004684.1 + 3850 0.66 0.551438
Target:  5'- -gCCgaggagGCc-GAGCGCCACGCCcGCGa -3'
miRNA:   3'- gaGGa-----CGcaCUCGUGGUGCGGuCGCc -5'
19023 5' -59.3 NC_004684.1 + 54429 0.66 0.541152
Target:  5'- -gCCUGC-----CGCCGCGUCGGCGGg -3'
miRNA:   3'- gaGGACGcacucGUGGUGCGGUCGCC- -5'
19023 5' -59.3 NC_004684.1 + 10712 0.66 0.541152
Target:  5'- gCUUCUGCGccAGCACCGCcaggcguuucuGCCA-CGGg -3'
miRNA:   3'- -GAGGACGCacUCGUGGUG-----------CGGUcGCC- -5'
19023 5' -59.3 NC_004684.1 + 11638 0.66 0.541152
Target:  5'- -gCCUGacCGUcGGCaucgGCCACGCCAGCa- -3'
miRNA:   3'- gaGGAC--GCAcUCG----UGGUGCGGUCGcc -5'
19023 5' -59.3 NC_004684.1 + 58085 0.66 0.530931
Target:  5'- uUCCUcgGCGggggGuAGCGCCAcCGUCGGCGu -3'
miRNA:   3'- gAGGA--CGCa---C-UCGUGGU-GCGGUCGCc -5'
19023 5' -59.3 NC_004684.1 + 63493 0.66 0.530931
Target:  5'- cCUCCaGCu---GCGCCuGCGCCAGCaGGg -3'
miRNA:   3'- -GAGGaCGcacuCGUGG-UGCGGUCG-CC- -5'
19023 5' -59.3 NC_004684.1 + 44245 0.67 0.52078
Target:  5'- gCUCCaGCGUGAcCAUgGCGCagucgaCGGCGGc -3'
miRNA:   3'- -GAGGaCGCACUcGUGgUGCG------GUCGCC- -5'
19023 5' -59.3 NC_004684.1 + 37141 0.67 0.52078
Target:  5'- -gCCacGUGUGAGCGCCACcUUGGUGGg -3'
miRNA:   3'- gaGGa-CGCACUCGUGGUGcGGUCGCC- -5'
19023 5' -59.3 NC_004684.1 + 63159 0.67 0.52078
Target:  5'- gCUCCUGC----GCGCCGCGCaGGCGc -3'
miRNA:   3'- -GAGGACGcacuCGUGGUGCGgUCGCc -5'
19023 5' -59.3 NC_004684.1 + 12189 0.67 0.52078
Target:  5'- -gCCU-CGUaggcauccAGCGCCGcCGCCAGCGGu -3'
miRNA:   3'- gaGGAcGCAc-------UCGUGGU-GCGGUCGCC- -5'
19023 5' -59.3 NC_004684.1 + 35499 0.67 0.52078
Target:  5'- gUCgCUGCGcguugagGAGCACCGgCGCUAcugcaccgaguGCGGg -3'
miRNA:   3'- gAG-GACGCa------CUCGUGGU-GCGGU-----------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.