miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19024 3' -56.7 NC_004684.1 + 62567 0.65 0.703021
Target:  5'- -gGCCuuGUCGGCCggaaucgacaccuuGCCGuugcGGUCGGCCa -3'
miRNA:   3'- uaCGGu-CAGCUGG--------------UGGU----CCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 47329 0.65 0.70196
Target:  5'- -cGCCGGUgugggcgucgagcaUGGCCACCAGGcCAcgguaggACCc -3'
miRNA:   3'- uaCGGUCA--------------GCUGGUGGUCCaGU-------UGGc -5'
19024 3' -56.7 NC_004684.1 + 29817 0.66 0.699836
Target:  5'- gAUGCCGGgcaccuccagcuccCGguaCACCGGGUCcACCGg -3'
miRNA:   3'- -UACGGUCa-------------GCug-GUGGUCCAGuUGGC- -5'
19024 3' -56.7 NC_004684.1 + 54119 0.66 0.69558
Target:  5'- -aGCCAccggCGGCCACCAgcgcgcuggcGGUCAcgGCCu -3'
miRNA:   3'- uaCGGUca--GCUGGUGGU----------CCAGU--UGGc -5'
19024 3' -56.7 NC_004684.1 + 16293 0.66 0.69558
Target:  5'- cUGCCAGUCguGACUucaugGCCAaGGUCGAguCCa -3'
miRNA:   3'- uACGGUCAG--CUGG-----UGGU-CCAGUU--GGc -5'
19024 3' -56.7 NC_004684.1 + 2459 0.66 0.69558
Target:  5'- -cGCCAGgCGcucaccgccGCCACCuGGGUCGccGCCa -3'
miRNA:   3'- uaCGGUCaGC---------UGGUGG-UCCAGU--UGGc -5'
19024 3' -56.7 NC_004684.1 + 1574 0.66 0.69558
Target:  5'- -cGCCGGU--GCCuCCGGGUCAccuGCCc -3'
miRNA:   3'- uaCGGUCAgcUGGuGGUCCAGU---UGGc -5'
19024 3' -56.7 NC_004684.1 + 66002 0.66 0.69558
Target:  5'- -gGCCAGUgcaaCGGCgGCCuuGGcGUCGGCCa -3'
miRNA:   3'- uaCGGUCA----GCUGgUGG--UC-CAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 51024 0.66 0.69558
Target:  5'- cUGCUGGUCcACCGgCAGGaugCGGCCa -3'
miRNA:   3'- uACGGUCAGcUGGUgGUCCa--GUUGGc -5'
19024 3' -56.7 NC_004684.1 + 14665 0.66 0.69558
Target:  5'- aGUGCgcucccgguuCAGuUCGACgCACCGcuGGUCAACCc -3'
miRNA:   3'- -UACG----------GUC-AGCUG-GUGGU--CCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 22064 0.66 0.6849
Target:  5'- -gGCaCAGUCuGGCUACCGGGaCA-CCGc -3'
miRNA:   3'- uaCG-GUCAG-CUGGUGGUCCaGUuGGC- -5'
19024 3' -56.7 NC_004684.1 + 3631 0.66 0.6849
Target:  5'- -gGCCGaagCGcGCCACCuGGGUCAuGCCGg -3'
miRNA:   3'- uaCGGUca-GC-UGGUGG-UCCAGU-UGGC- -5'
19024 3' -56.7 NC_004684.1 + 64309 0.66 0.6849
Target:  5'- -gGCC-GUCGuggugguugaacACCGCCAGGUaCAGCUu -3'
miRNA:   3'- uaCGGuCAGC------------UGGUGGUCCA-GUUGGc -5'
19024 3' -56.7 NC_004684.1 + 20337 0.66 0.6849
Target:  5'- -gGCCGggcauGUCGGCCuCCGGGUgGGgCGg -3'
miRNA:   3'- uaCGGU-----CAGCUGGuGGUCCAgUUgGC- -5'
19024 3' -56.7 NC_004684.1 + 59460 0.66 0.6849
Target:  5'- -cGCCGGUCGGCgGCgAuGUCcACCa -3'
miRNA:   3'- uaCGGUCAGCUGgUGgUcCAGuUGGc -5'
19024 3' -56.7 NC_004684.1 + 55447 0.66 0.674171
Target:  5'- gGUGCCAGgcuggCGACCaugGCCAgcGGaCGGCCc -3'
miRNA:   3'- -UACGGUCa----GCUGG---UGGU--CCaGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 45404 0.66 0.674171
Target:  5'- -gGCCuccUgGACCGCgCGGGUCAGCUc -3'
miRNA:   3'- uaCGGuc-AgCUGGUG-GUCCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 50111 0.66 0.674171
Target:  5'- -gGCUGGcccccaccUCGAUgGCCAGGUUGAUCGg -3'
miRNA:   3'- uaCGGUC--------AGCUGgUGGUCCAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 28899 0.66 0.674171
Target:  5'- -cGCCGuggCGACCGCCGcuGaUCGACCGg -3'
miRNA:   3'- uaCGGUca-GCUGGUGGU--CcAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 54221 0.66 0.674171
Target:  5'- -gGCCgaGGUCGGCCAgcagcuguuCCAGGgCAccgcGCCGg -3'
miRNA:   3'- uaCGG--UCAGCUGGU---------GGUCCaGU----UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.