miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19024 3' -56.7 NC_004684.1 + 62567 0.65 0.703021
Target:  5'- -gGCCuuGUCGGCCggaaucgacaccuuGCCGuugcGGUCGGCCa -3'
miRNA:   3'- uaCGGu-CAGCUGG--------------UGGU----CCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 47329 0.65 0.70196
Target:  5'- -cGCCGGUgugggcgucgagcaUGGCCACCAGGcCAcgguaggACCc -3'
miRNA:   3'- uaCGGUCA--------------GCUGGUGGUCCaGU-------UGGc -5'
19024 3' -56.7 NC_004684.1 + 49104 0.66 0.663403
Target:  5'- gGUGCCacaGGUCG-CCGUCGGcGUCGGCCu -3'
miRNA:   3'- -UACGG---UCAGCuGGUGGUC-CAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 50111 0.66 0.674171
Target:  5'- -gGCUGGcccccaccUCGAUgGCCAGGUUGAUCGg -3'
miRNA:   3'- uaCGGUC--------AGCUGgUGGUCCAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 66982 0.66 0.663403
Target:  5'- gGUGCCAGUCGcccagcuugcccGCCACgGcGGUgauccUGACCGg -3'
miRNA:   3'- -UACGGUCAGC------------UGGUGgU-CCA-----GUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 26816 0.66 0.673095
Target:  5'- -gGCCGGUUGAUgaacgaCACCAgcgcgcuGGUgGACCGg -3'
miRNA:   3'- uaCGGUCAGCUG------GUGGU-------CCAgUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 28899 0.66 0.674171
Target:  5'- -cGCCGuggCGACCGCCGcuGaUCGACCGg -3'
miRNA:   3'- uaCGGUca-GCUGGUGGU--CcAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 54221 0.66 0.674171
Target:  5'- -gGCCgaGGUCGGCCAgcagcuguuCCAGGgCAccgcGCCGg -3'
miRNA:   3'- uaCGG--UCAGCUGGU---------GGUCCaGU----UGGC- -5'
19024 3' -56.7 NC_004684.1 + 3631 0.66 0.6849
Target:  5'- -gGCCGaagCGcGCCACCuGGGUCAuGCCGg -3'
miRNA:   3'- uaCGGUca-GC-UGGUGG-UCCAGU-UGGC- -5'
19024 3' -56.7 NC_004684.1 + 22064 0.66 0.6849
Target:  5'- -gGCaCAGUCuGGCUACCGGGaCA-CCGc -3'
miRNA:   3'- uaCG-GUCAG-CUGGUGGUCCaGUuGGC- -5'
19024 3' -56.7 NC_004684.1 + 36788 0.66 0.663403
Target:  5'- -cGCUGGUCGGCgGCgGcucGGUCAGCUa -3'
miRNA:   3'- uaCGGUCAGCUGgUGgU---CCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 66849 0.66 0.652608
Target:  5'- gGUGgCGGccUCGACCGCCuGGcCAGCaCGu -3'
miRNA:   3'- -UACgGUC--AGCUGGUGGuCCaGUUG-GC- -5'
19024 3' -56.7 NC_004684.1 + 53399 0.66 0.652608
Target:  5'- cGUGCC-GUCGGgCAacugcuCCAGGUCuGCCu -3'
miRNA:   3'- -UACGGuCAGCUgGU------GGUCCAGuUGGc -5'
19024 3' -56.7 NC_004684.1 + 64879 0.66 0.652608
Target:  5'- uUGuCCGGUCGcGCCcCCGGGU--ACCGa -3'
miRNA:   3'- uAC-GGUCAGC-UGGuGGUCCAguUGGC- -5'
19024 3' -56.7 NC_004684.1 + 49310 0.66 0.649365
Target:  5'- uUGCCGuccaggaucgacccGUCGGCgGCCAuGGUCGGCg- -3'
miRNA:   3'- uACGGU--------------CAGCUGgUGGU-CCAGUUGgc -5'
19024 3' -56.7 NC_004684.1 + 66002 0.66 0.69558
Target:  5'- -gGCCAGUgcaaCGGCgGCCuuGGcGUCGGCCa -3'
miRNA:   3'- uaCGGUCA----GCUGgUGG--UC-CAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 59460 0.66 0.6849
Target:  5'- -cGCCGGUCGGCgGCgAuGUCcACCa -3'
miRNA:   3'- uaCGGUCAGCUGgUGgUcCAGuUGGc -5'
19024 3' -56.7 NC_004684.1 + 29817 0.66 0.699836
Target:  5'- gAUGCCGGgcaccuccagcuccCGguaCACCGGGUCcACCGg -3'
miRNA:   3'- -UACGGUCa-------------GCug-GUGGUCCAGuUGGC- -5'
19024 3' -56.7 NC_004684.1 + 14665 0.66 0.69558
Target:  5'- aGUGCgcucccgguuCAGuUCGACgCACCGcuGGUCAACCc -3'
miRNA:   3'- -UACG----------GUC-AGCUG-GUGGU--CCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 51024 0.66 0.69558
Target:  5'- cUGCUGGUCcACCGgCAGGaugCGGCCa -3'
miRNA:   3'- uACGGUCAGcUGGUgGUCCa--GUUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.