miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19024 3' -56.7 NC_004684.1 + 61272 0.68 0.56637
Target:  5'- gGUGUCGGgauUCGACagcugCGCCGGGUCGAuuuCCGg -3'
miRNA:   3'- -UACGGUC---AGCUG-----GUGGUCCAGUU---GGC- -5'
19024 3' -56.7 NC_004684.1 + 22905 0.7 0.444016
Target:  5'- gGUGCCAG-CGACaaggugACCGGGUUccugGACCGc -3'
miRNA:   3'- -UACGGUCaGCUGg-----UGGUCCAG----UUGGC- -5'
19024 3' -56.7 NC_004684.1 + 23890 0.7 0.453676
Target:  5'- -cGCUGGUccCGACCGCCccGGcUCGACCGa -3'
miRNA:   3'- uaCGGUCA--GCUGGUGGu-CC-AGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 6671 0.69 0.483318
Target:  5'- cAUGCCAcGggagUGGCCuGCaCAGGUCGACCu -3'
miRNA:   3'- -UACGGU-Ca---GCUGG-UG-GUCCAGUUGGc -5'
19024 3' -56.7 NC_004684.1 + 36912 0.69 0.503588
Target:  5'- -gGCCGGUgGcAUCGCCcGGUCGagGCCGg -3'
miRNA:   3'- uaCGGUCAgC-UGGUGGuCCAGU--UGGC- -5'
19024 3' -56.7 NC_004684.1 + 41348 0.69 0.513861
Target:  5'- -gGCCGGgccaaGGCCACCcGGuucaUCGACCGa -3'
miRNA:   3'- uaCGGUCag---CUGGUGGuCC----AGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 7901 0.68 0.534654
Target:  5'- cGUGCCcuGGU-GGCCGCCAGc-CAGCCGg -3'
miRNA:   3'- -UACGG--UCAgCUGGUGGUCcaGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 39340 0.68 0.555737
Target:  5'- -gGCCGGUUGGCCGCCcacucGUCAAUgGu -3'
miRNA:   3'- uaCGGUCAGCUGGUGGuc---CAGUUGgC- -5'
19024 3' -56.7 NC_004684.1 + 42216 0.68 0.56637
Target:  5'- -gGCCGacgUGGCCGCCGGuGUCGgcACCGg -3'
miRNA:   3'- uaCGGUca-GCUGGUGGUC-CAGU--UGGC- -5'
19024 3' -56.7 NC_004684.1 + 3958 0.7 0.444016
Target:  5'- --aCCGGaCGACCccgGCCAGGUCAuccugGCCGg -3'
miRNA:   3'- uacGGUCaGCUGG---UGGUCCAGU-----UGGC- -5'
19024 3' -56.7 NC_004684.1 + 682 0.7 0.444016
Target:  5'- -cGCCuGauccUCGGCC-CCgAGGUCAGCCGc -3'
miRNA:   3'- uaCGGuC----AGCUGGuGG-UCCAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 45363 0.7 0.415749
Target:  5'- cGUGuCCgAGUUGGCCAgCAGGUCGauGCUGa -3'
miRNA:   3'- -UAC-GG-UCAGCUGGUgGUCCAGU--UGGC- -5'
19024 3' -56.7 NC_004684.1 + 158 0.74 0.251534
Target:  5'- -cGCCGGUCGaACCggugACCGGGUUggUCGg -3'
miRNA:   3'- uaCGGUCAGC-UGG----UGGUCCAGuuGGC- -5'
19024 3' -56.7 NC_004684.1 + 28416 0.73 0.292251
Target:  5'- -cGCCGGUUGACCugguGGUCGACUGg -3'
miRNA:   3'- uaCGGUCAGCUGGugguCCAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 53734 0.72 0.322155
Target:  5'- gGUGCCGGguUCGACgGCCAGGaacACCGa -3'
miRNA:   3'- -UACGGUC--AGCUGgUGGUCCaguUGGC- -5'
19024 3' -56.7 NC_004684.1 + 48062 0.72 0.32919
Target:  5'- gAUGgCGGuuUCGACCACCGGuuccggcGUCGGCCGg -3'
miRNA:   3'- -UACgGUC--AGCUGGUGGUC-------CAGUUGGC- -5'
19024 3' -56.7 NC_004684.1 + 49204 0.72 0.354285
Target:  5'- cUGCuCGGUCGGCCAgUcGGUCGguGCCGg -3'
miRNA:   3'- uACG-GUCAGCUGGUgGuCCAGU--UGGC- -5'
19024 3' -56.7 NC_004684.1 + 59860 0.72 0.354285
Target:  5'- -cGCCA--CGGCgGCCAGGUCGGuCCGg -3'
miRNA:   3'- uaCGGUcaGCUGgUGGUCCAGUU-GGC- -5'
19024 3' -56.7 NC_004684.1 + 65898 0.71 0.362663
Target:  5'- -cGCaGGUUGGCCACCAGGgCcGCCGc -3'
miRNA:   3'- uaCGgUCAGCUGGUGGUCCaGuUGGC- -5'
19024 3' -56.7 NC_004684.1 + 35897 0.71 0.406575
Target:  5'- -cGgCGGUCG-CgGCCAGGUgGACCGc -3'
miRNA:   3'- uaCgGUCAGCuGgUGGUCCAgUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.