miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19024 5' -60.5 NC_004684.1 + 38663 0.66 0.478478
Target:  5'- aACGGCGucGAccugauccaGGuccGGCgCGGCUCCCAg -3'
miRNA:   3'- aUGCCGCu-CU---------CCua-CCG-GUCGAGGGU- -5'
19024 5' -60.5 NC_004684.1 + 9708 0.66 0.467736
Target:  5'- gACGGCGAGGuGuccugauGUGGCC-GCUaCCCGg -3'
miRNA:   3'- aUGCCGCUCUcC-------UACCGGuCGA-GGGU- -5'
19024 5' -60.5 NC_004684.1 + 59132 0.66 0.45616
Target:  5'- --aGGCGGGAcuugucggugaacaGGAUGGCCacccaGGuCUCCCc -3'
miRNA:   3'- augCCGCUCU--------------CCUACCGG-----UC-GAGGGu -5'
19024 5' -60.5 NC_004684.1 + 57290 0.67 0.421474
Target:  5'- gACGGCGAGccGcaccccGGCCAGCccugCCCGg -3'
miRNA:   3'- aUGCCGCUCucCua----CCGGUCGa---GGGU- -5'
19024 5' -60.5 NC_004684.1 + 15721 0.67 0.421474
Target:  5'- aAUGGCuGGAGGcucGUGGCgAGUUgCCCAg -3'
miRNA:   3'- aUGCCGcUCUCC---UACCGgUCGA-GGGU- -5'
19024 5' -60.5 NC_004684.1 + 5951 0.67 0.412376
Target:  5'- gGCGGCGAGAcaAUGccGCCGGUgUCCCGu -3'
miRNA:   3'- aUGCCGCUCUccUAC--CGGUCG-AGGGU- -5'
19024 5' -60.5 NC_004684.1 + 18464 0.67 0.412376
Target:  5'- -uCGGCGAcGAGGccgGGCCuGCggaCCCGc -3'
miRNA:   3'- auGCCGCU-CUCCua-CCGGuCGa--GGGU- -5'
19024 5' -60.5 NC_004684.1 + 48959 0.67 0.408771
Target:  5'- -uCGGCGGGcGGGGUGGCCggGGCgggcgcgucggugCCCu -3'
miRNA:   3'- auGCCGCUC-UCCUACCGG--UCGa------------GGGu -5'
19024 5' -60.5 NC_004684.1 + 864 0.67 0.403399
Target:  5'- cUAC-GCGAcGAGGAcGGCCAGCacgugaUCCCc -3'
miRNA:   3'- -AUGcCGCU-CUCCUaCCGGUCG------AGGGu -5'
19024 5' -60.5 NC_004684.1 + 9333 0.67 0.394548
Target:  5'- gACGGgGAcGAGGA-GGCCuccgguGCgUCCCGg -3'
miRNA:   3'- aUGCCgCU-CUCCUaCCGGu-----CG-AGGGU- -5'
19024 5' -60.5 NC_004684.1 + 57436 0.67 0.394548
Target:  5'- gGCGGCGuuAGGAUcgGGCgCAuGuCUCCCGa -3'
miRNA:   3'- aUGCCGCucUCCUA--CCG-GU-C-GAGGGU- -5'
19024 5' -60.5 NC_004684.1 + 22208 0.67 0.394548
Target:  5'- cGCGGCGGGGuGGUGGCCGaCUUCa- -3'
miRNA:   3'- aUGCCGCUCUcCUACCGGUcGAGGgu -5'
19024 5' -60.5 NC_004684.1 + 28748 0.68 0.36876
Target:  5'- gUGCGGUGcGAGGAcaaCCGGUUCCCGc -3'
miRNA:   3'- -AUGCCGCuCUCCUaccGGUCGAGGGU- -5'
19024 5' -60.5 NC_004684.1 + 39163 0.68 0.36792
Target:  5'- aACGGCGAGuuccgggugcaauGGGAUGacuCCAGCggcaccgCCCAg -3'
miRNA:   3'- aUGCCGCUC-------------UCCUACc--GGUCGa------GGGU- -5'
19024 5' -60.5 NC_004684.1 + 27799 0.68 0.360425
Target:  5'- cGCGGCGGuucGGuccUGGCCuGCUCCUg -3'
miRNA:   3'- aUGCCGCUcu-CCu--ACCGGuCGAGGGu -5'
19024 5' -60.5 NC_004684.1 + 57526 0.68 0.344152
Target:  5'- cGCGGCGucGGGAUccGGCggCAGCUCaCCGg -3'
miRNA:   3'- aUGCCGCucUCCUA--CCG--GUCGAG-GGU- -5'
19024 5' -60.5 NC_004684.1 + 30184 0.69 0.313214
Target:  5'- gGCGGCGAGcuGGUGGCCAcCaaaCCCGg -3'
miRNA:   3'- aUGCCGCUCucCUACCGGUcGa--GGGU- -5'
19024 5' -60.5 NC_004684.1 + 34430 0.69 0.291425
Target:  5'- gGCGGCGAGGu--UGGCCAGCgcgagcgCCUg -3'
miRNA:   3'- aUGCCGCUCUccuACCGGUCGa------GGGu -5'
19024 5' -60.5 NC_004684.1 + 39009 1.06 0.000513
Target:  5'- gUACGGCGAGAGGAUGGCCAGCUCCCAg -3'
miRNA:   3'- -AUGCCGCUCUCCUACCGGUCGAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.