miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19025 5' -51.8 NC_004684.1 + 34698 0.66 0.9331
Target:  5'- --aCGCggaGACGUUGCG-GUUGCCgagGCc -3'
miRNA:   3'- caaGCGg--CUGCAACGCuUAGUGGa--CG- -5'
19025 5' -51.8 NC_004684.1 + 6422 0.66 0.9331
Target:  5'- -cUCGgCGGCGgcGUGAA-CGCCUucGCg -3'
miRNA:   3'- caAGCgGCUGCaaCGCUUaGUGGA--CG- -5'
19025 5' -51.8 NC_004684.1 + 26601 0.66 0.9331
Target:  5'- gGUUCGCCaccGGCGgcgGCGucAUCGCCa-- -3'
miRNA:   3'- -CAAGCGG---CUGCaa-CGCu-UAGUGGacg -5'
19025 5' -51.8 NC_004684.1 + 56501 0.66 0.9331
Target:  5'- --gCGCCGACccggGUG-GUCACCgGCg -3'
miRNA:   3'- caaGCGGCUGcaa-CGCuUAGUGGaCG- -5'
19025 5' -51.8 NC_004684.1 + 17381 0.66 0.9331
Target:  5'- --cCGCCGACGgUGCGca-CACCcgGUc -3'
miRNA:   3'- caaGCGGCUGCaACGCuuaGUGGa-CG- -5'
19025 5' -51.8 NC_004684.1 + 953 0.66 0.9331
Target:  5'- cUUCGCgGGCc-UGCGggUCAUUgGCg -3'
miRNA:   3'- cAAGCGgCUGcaACGCuuAGUGGaCG- -5'
19025 5' -51.8 NC_004684.1 + 4591 0.66 0.931452
Target:  5'- -cUCGCCaccCGgUGUGAcgcgaaaccugcucAUCACCUGCc -3'
miRNA:   3'- caAGCGGcu-GCaACGCU--------------UAGUGGACG- -5'
19025 5' -51.8 NC_004684.1 + 46270 0.66 0.927509
Target:  5'- --cCGCCGgacacguggaACGggGUGAccAUgACCUGCg -3'
miRNA:   3'- caaGCGGC----------UGCaaCGCU--UAgUGGACG- -5'
19025 5' -51.8 NC_004684.1 + 41466 0.66 0.927509
Target:  5'- -gUUGCCGAUGUucgGCGAGagcgCGCUgaUGCc -3'
miRNA:   3'- caAGCGGCUGCAa--CGCUUa---GUGG--ACG- -5'
19025 5' -51.8 NC_004684.1 + 21908 0.66 0.926935
Target:  5'- --aUGCCcGACG-UGCGAccucuacGUCACCgagUGCg -3'
miRNA:   3'- caaGCGG-CUGCaACGCU-------UAGUGG---ACG- -5'
19025 5' -51.8 NC_004684.1 + 45459 0.66 0.921638
Target:  5'- --aCGCCGAgGUUgaugcucccgGCGGugGUCACCggGCc -3'
miRNA:   3'- caaGCGGCUgCAA----------CGCU--UAGUGGa-CG- -5'
19025 5' -51.8 NC_004684.1 + 4763 0.66 0.921638
Target:  5'- --aCGCCGccuuCG-UGCGcGUCGCCaGCa -3'
miRNA:   3'- caaGCGGCu---GCaACGCuUAGUGGaCG- -5'
19025 5' -51.8 NC_004684.1 + 2805 0.66 0.921638
Target:  5'- aGUUCGCCGAgGccaaGAAgcuCCUGCg -3'
miRNA:   3'- -CAAGCGGCUgCaacgCUUaguGGACG- -5'
19025 5' -51.8 NC_004684.1 + 7710 0.66 0.921638
Target:  5'- -gUCGCCGugGcgcuggccGUGAGcCACCUGa -3'
miRNA:   3'- caAGCGGCugCaa------CGCUUaGUGGACg -5'
19025 5' -51.8 NC_004684.1 + 20621 0.66 0.921638
Target:  5'- ---gGUCGACGguuccUGCGc--CGCCUGCg -3'
miRNA:   3'- caagCGGCUGCa----ACGCuuaGUGGACG- -5'
19025 5' -51.8 NC_004684.1 + 30092 0.66 0.921035
Target:  5'- --aCGCCGAaugggccCGcagUGUGGAgcaaCGCCUGCg -3'
miRNA:   3'- caaGCGGCU-------GCa--ACGCUUa---GUGGACG- -5'
19025 5' -51.8 NC_004684.1 + 14695 0.66 0.915486
Target:  5'- ---gGCCGACGggcGCGAGg-ACCUGg -3'
miRNA:   3'- caagCGGCUGCaa-CGCUUagUGGACg -5'
19025 5' -51.8 NC_004684.1 + 60145 0.66 0.915486
Target:  5'- -cUCGgUGGCGUaGCGGAUUugCUcgGCg -3'
miRNA:   3'- caAGCgGCUGCAaCGCUUAGugGA--CG- -5'
19025 5' -51.8 NC_004684.1 + 35499 0.66 0.909056
Target:  5'- -gUCGCUGcGCGUUGaGGAgCACCgGCg -3'
miRNA:   3'- caAGCGGC-UGCAACgCUUaGUGGaCG- -5'
19025 5' -51.8 NC_004684.1 + 3519 0.66 0.909056
Target:  5'- -aUCGCCGACGg-GUGGGcCgACCUGg -3'
miRNA:   3'- caAGCGGCUGCaaCGCUUaG-UGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.