miRNA display CGI


Results 1 - 20 of 301 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19026 3' -59.8 NC_004684.1 + 25062 0.66 0.519254
Target:  5'- aGGUGGCCAgggCGGCCGGguUGguGGCCUc -3'
miRNA:   3'- -CCGUUGGUg--GCUGGUC--GCguCCGGAa -5'
19026 3' -59.8 NC_004684.1 + 52207 0.66 0.519254
Target:  5'- cGGCAAuCUugCGAaucuccCCGGCGUcgaucAGGCCg- -3'
miRNA:   3'- -CCGUU-GGugGCU------GGUCGCG-----UCCGGaa -5'
19026 3' -59.8 NC_004684.1 + 43065 0.66 0.519254
Target:  5'- cGGCGACCACguccuCG-UCGGUGUAGGCg-- -3'
miRNA:   3'- -CCGUUGGUG-----GCuGGUCGCGUCCGgaa -5'
19026 3' -59.8 NC_004684.1 + 16799 0.66 0.519254
Target:  5'- cGcCGACCGCCGACCcgacGGCaUAGGCUc- -3'
miRNA:   3'- cC-GUUGGUGGCUGG----UCGcGUCCGGaa -5'
19026 3' -59.8 NC_004684.1 + 22094 0.66 0.519254
Target:  5'- aGCGACgGCUGGCUGGUGUuccuguGGCCg- -3'
miRNA:   3'- cCGUUGgUGGCUGGUCGCGu-----CCGGaa -5'
19026 3' -59.8 NC_004684.1 + 25123 0.66 0.519254
Target:  5'- cGGUggUCACCGccaucACCAGCGCGcGCa-- -3'
miRNA:   3'- -CCGuuGGUGGC-----UGGUCGCGUcCGgaa -5'
19026 3' -59.8 NC_004684.1 + 8636 0.66 0.519254
Target:  5'- uGCAGCCACCG-CCAGgGCAacgcgaucaugcGuGCCc- -3'
miRNA:   3'- cCGUUGGUGGCuGGUCgCGU------------C-CGGaa -5'
19026 3' -59.8 NC_004684.1 + 41465 0.66 0.519254
Target:  5'- gGGCuGACC-CCGG-CGGUGCuGGCCa- -3'
miRNA:   3'- -CCG-UUGGuGGCUgGUCGCGuCCGGaa -5'
19026 3' -59.8 NC_004684.1 + 8677 0.66 0.519254
Target:  5'- cGGCcagguGCCugUGGCCGuGCGUgAGGUCUg -3'
miRNA:   3'- -CCGu----UGGugGCUGGU-CGCG-UCCGGAa -5'
19026 3' -59.8 NC_004684.1 + 13154 0.66 0.513136
Target:  5'- cGGCGcgguGCCcuggaacagcugcugGCCGACCucGGCcccgaGCAGGCCg- -3'
miRNA:   3'- -CCGU----UGG---------------UGGCUGG--UCG-----CGUCCGGaa -5'
19026 3' -59.8 NC_004684.1 + 63352 0.66 0.509073
Target:  5'- cGGUGACCGC---CCAGCGCAccgagcGGCCg- -3'
miRNA:   3'- -CCGUUGGUGgcuGGUCGCGU------CCGGaa -5'
19026 3' -59.8 NC_004684.1 + 20307 0.66 0.509073
Target:  5'- cGGC-ACCGCCGuuCUGGUGCccuggcaauGGGCCg- -3'
miRNA:   3'- -CCGuUGGUGGCu-GGUCGCG---------UCCGGaa -5'
19026 3' -59.8 NC_004684.1 + 28905 0.66 0.509073
Target:  5'- cGGUGGCCuuGCUGacGCCGGUGCcuGCCUUg -3'
miRNA:   3'- -CCGUUGG--UGGC--UGGUCGCGucCGGAA- -5'
19026 3' -59.8 NC_004684.1 + 10073 0.66 0.509073
Target:  5'- uGGCcuacGGCCAgUCGACCGG-GCAGGgCUg -3'
miRNA:   3'- -CCG----UUGGU-GGCUGGUCgCGUCCgGAa -5'
19026 3' -59.8 NC_004684.1 + 35405 0.66 0.509073
Target:  5'- uGGCGGCCugCGGguagaUCAGCGCggAGGUg-- -3'
miRNA:   3'- -CCGUUGGugGCU-----GGUCGCG--UCCGgaa -5'
19026 3' -59.8 NC_004684.1 + 63157 0.66 0.509073
Target:  5'- cGGCu-CCugCGcGCC-GCGCAGGCg-- -3'
miRNA:   3'- -CCGuuGGugGC-UGGuCGCGUCCGgaa -5'
19026 3' -59.8 NC_004684.1 + 36032 0.66 0.509073
Target:  5'- cGGCAucugACCGCCGugCAGacacCGGGCa-- -3'
miRNA:   3'- -CCGU----UGGUGGCugGUCgc--GUCCGgaa -5'
19026 3' -59.8 NC_004684.1 + 42880 0.66 0.509073
Target:  5'- uGGC-ACCGCCGAac-GCGC-GGCCc- -3'
miRNA:   3'- -CCGuUGGUGGCUgguCGCGuCCGGaa -5'
19026 3' -59.8 NC_004684.1 + 3142 0.66 0.509073
Target:  5'- uGGUGugCGCCaacacCCAGCGCcuGGCCg- -3'
miRNA:   3'- -CCGUugGUGGcu---GGUCGCGu-CCGGaa -5'
19026 3' -59.8 NC_004684.1 + 35521 0.66 0.509073
Target:  5'- cGGC-GCUACUGcACCgAGUGCGGGCa-- -3'
miRNA:   3'- -CCGuUGGUGGC-UGG-UCGCGUCCGgaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.