miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19026 5' -53.6 NC_004684.1 + 2860 0.66 0.853569
Target:  5'- cGGGuUCCUGgUCgCGCCGGacgacCUGCUGGu -3'
miRNA:   3'- aCUUcAGGACaAG-GUGGUC-----GACGACC- -5'
19026 5' -53.6 NC_004684.1 + 2688 0.66 0.845003
Target:  5'- gGAGGcCCUGgcggCCGCCAacauGCUcGaCUGGg -3'
miRNA:   3'- aCUUCaGGACaa--GGUGGU----CGA-C-GACC- -5'
19026 5' -53.6 NC_004684.1 + 15497 0.66 0.836211
Target:  5'- cUGGAGuUCCUGgacaaggCCGCCcggggccgGGC-GCUGGa -3'
miRNA:   3'- -ACUUC-AGGACaa-----GGUGG--------UCGaCGACC- -5'
19026 5' -53.6 NC_004684.1 + 58960 0.66 0.836211
Target:  5'- -cGGGcCCUG-UCCGCCgAGCUgccgcGCUGGu -3'
miRNA:   3'- acUUCaGGACaAGGUGG-UCGA-----CGACC- -5'
19026 5' -53.6 NC_004684.1 + 12892 0.66 0.827203
Target:  5'- gGGAG-CCUGcgcucgCCGCCAGCggUGCcGGu -3'
miRNA:   3'- aCUUCaGGACaa----GGUGGUCG--ACGaCC- -5'
19026 5' -53.6 NC_004684.1 + 40520 0.66 0.817989
Target:  5'- cGAAugcgcUCCUGcgCCGCCuccuGCUcGCUGGu -3'
miRNA:   3'- aCUUc----AGGACaaGGUGGu---CGA-CGACC- -5'
19026 5' -53.6 NC_004684.1 + 35935 0.66 0.808577
Target:  5'- cGAGGaCCUGcUCUACgGGCgGCUGu -3'
miRNA:   3'- aCUUCaGGACaAGGUGgUCGaCGACc -5'
19026 5' -53.6 NC_004684.1 + 13242 0.67 0.79509
Target:  5'- gGGAGUUCcGUggccaggccgugaCCGCCAGCgcGCUGGu -3'
miRNA:   3'- aCUUCAGGaCAa------------GGUGGUCGa-CGACC- -5'
19026 5' -53.6 NC_004684.1 + 10540 0.67 0.789205
Target:  5'- cUGAccUCgUGgugcUCCACCAGCUGCgccaGGu -3'
miRNA:   3'- -ACUucAGgACa---AGGUGGUCGACGa---CC- -5'
19026 5' -53.6 NC_004684.1 + 59538 0.67 0.789205
Target:  5'- -cAGGUCCUGcaCCGCCAGC-GCg-- -3'
miRNA:   3'- acUUCAGGACaaGGUGGUCGaCGacc -5'
19026 5' -53.6 NC_004684.1 + 502 0.67 0.788218
Target:  5'- cGAAGgccgcgCCgaagGUcgCCACCGGCgcugacgUGCUGGc -3'
miRNA:   3'- aCUUCa-----GGa---CAa-GGUGGUCG-------ACGACC- -5'
19026 5' -53.6 NC_004684.1 + 25770 0.67 0.779266
Target:  5'- cUGgcGUCCgGcUCCACCGGCgGCa-- -3'
miRNA:   3'- -ACuuCAGGaCaAGGUGGUCGaCGacc -5'
19026 5' -53.6 NC_004684.1 + 62883 0.67 0.779266
Target:  5'- -cGGGUCCacgGUggCCGCCAGCUcgGCgGGg -3'
miRNA:   3'- acUUCAGGa--CAa-GGUGGUCGA--CGaCC- -5'
19026 5' -53.6 NC_004684.1 + 56012 0.67 0.769173
Target:  5'- -cAAGUCgCgca-CCACCAcGCUGCUGGc -3'
miRNA:   3'- acUUCAG-GacaaGGUGGU-CGACGACC- -5'
19026 5' -53.6 NC_004684.1 + 31457 0.67 0.769173
Target:  5'- cGAGGaCgUGUcauuUCCGCgCGcGCUGCUGGu -3'
miRNA:   3'- aCUUCaGgACA----AGGUG-GU-CGACGACC- -5'
19026 5' -53.6 NC_004684.1 + 67033 0.68 0.748573
Target:  5'- cGAuggCCUGg-CCACCgAGCUGCUGc -3'
miRNA:   3'- aCUucaGGACaaGGUGG-UCGACGACc -5'
19026 5' -53.6 NC_004684.1 + 16955 0.68 0.748572
Target:  5'- cGAGG-CCUGcaagcgggCCugCAccuGCUGCUGGu -3'
miRNA:   3'- aCUUCaGGACaa------GGugGU---CGACGACC- -5'
19026 5' -53.6 NC_004684.1 + 33669 0.68 0.727495
Target:  5'- aUGgcGUCgCUGUgcaCCACCAccGC-GCUGGa -3'
miRNA:   3'- -ACuuCAG-GACAa--GGUGGU--CGaCGACC- -5'
19026 5' -53.6 NC_004684.1 + 52272 0.68 0.716807
Target:  5'- cUGgcGUUgUGgaaCACCAGCUuGCUGGc -3'
miRNA:   3'- -ACuuCAGgACaagGUGGUCGA-CGACC- -5'
19026 5' -53.6 NC_004684.1 + 53926 0.69 0.695188
Target:  5'- uUGccGUCCUcggCCuCCAGCUGCUGc -3'
miRNA:   3'- -ACuuCAGGAcaaGGuGGUCGACGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.