miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19027 5' -57.1 NC_004684.1 + 10528 0.66 0.700122
Target:  5'- -cGCGCACCGCucgccgguagCUUCaucgUCGGCGg-GGAg -3'
miRNA:   3'- acUGCGUGGCG----------GAAG----AGCCGCaaCCU- -5'
19027 5' -57.1 NC_004684.1 + 42972 0.66 0.700122
Target:  5'- aGGCGUcgacuucgGCCuggGCCUUCUUGGUGUcGGc -3'
miRNA:   3'- aCUGCG--------UGG---CGGAAGAGCCGCAaCCu -5'
19027 5' -57.1 NC_004684.1 + 2150 0.66 0.700122
Target:  5'- cGGCGCGUCGgUgaaCUCGGCGUUGa- -3'
miRNA:   3'- aCUGCGUGGCgGaa-GAGCCGCAACcu -5'
19027 5' -57.1 NC_004684.1 + 47233 0.66 0.700122
Target:  5'- -aGCGCACCGCCU-Cg-GGCGcgaGGGu -3'
miRNA:   3'- acUGCGUGGCGGAaGagCCGCaa-CCU- -5'
19027 5' -57.1 NC_004684.1 + 60187 0.66 0.689571
Target:  5'- aGACGCgGCCuggcaggauguGCUga-UCGGCGUUGGc -3'
miRNA:   3'- aCUGCG-UGG-----------CGGaagAGCCGCAACCu -5'
19027 5' -57.1 NC_004684.1 + 51899 0.66 0.689571
Target:  5'- gGugGCACCGaa--CUCGGCGaacGGGu -3'
miRNA:   3'- aCugCGUGGCggaaGAGCCGCaa-CCU- -5'
19027 5' -57.1 NC_004684.1 + 1351 0.66 0.687454
Target:  5'- cGACGCGcucaagcucCCGuUCUUCUCGGUGgacagcuccgggUGGGg -3'
miRNA:   3'- aCUGCGU---------GGC-GGAAGAGCCGCa-----------ACCU- -5'
19027 5' -57.1 NC_004684.1 + 32635 0.66 0.678968
Target:  5'- gGACGaCACCGCCgagaUCGuGCcgGUUGGc -3'
miRNA:   3'- aCUGC-GUGGCGGaag-AGC-CG--CAACCu -5'
19027 5' -57.1 NC_004684.1 + 42521 0.66 0.668323
Target:  5'- cGGCGCgcucACCGCCguggUCGGCGUgcuGAc -3'
miRNA:   3'- aCUGCG----UGGCGGaag-AGCCGCAac-CU- -5'
19027 5' -57.1 NC_004684.1 + 66892 0.66 0.668323
Target:  5'- cGACcuucgGCGCgGCCUUCggcgCGGCcUUGGc -3'
miRNA:   3'- aCUG-----CGUGgCGGAAGa---GCCGcAACCu -5'
19027 5' -57.1 NC_004684.1 + 29194 0.66 0.657645
Target:  5'- gGACGCAgUGgg-UCUCGGUGUgGGAc -3'
miRNA:   3'- aCUGCGUgGCggaAGAGCCGCAaCCU- -5'
19027 5' -57.1 NC_004684.1 + 2738 0.66 0.657645
Target:  5'- --cCGCACgGCCacacgUUCGGCGUcgagUGGAc -3'
miRNA:   3'- acuGCGUGgCGGaa---GAGCCGCA----ACCU- -5'
19027 5' -57.1 NC_004684.1 + 55807 0.66 0.657645
Target:  5'- aGGCGCACCGgCgggCU-GGUG-UGGAa -3'
miRNA:   3'- aCUGCGUGGCgGaa-GAgCCGCaACCU- -5'
19027 5' -57.1 NC_004684.1 + 7502 0.67 0.636232
Target:  5'- --gUGCGCCGCCgcaUCGGgG-UGGAc -3'
miRNA:   3'- acuGCGUGGCGGaagAGCCgCaACCU- -5'
19027 5' -57.1 NC_004684.1 + 65706 0.67 0.636232
Target:  5'- cGAUGCG-CGCCagCUCGGCcuggUGGGc -3'
miRNA:   3'- aCUGCGUgGCGGaaGAGCCGca--ACCU- -5'
19027 5' -57.1 NC_004684.1 + 40458 0.67 0.625515
Target:  5'- aGGCG-GCCGCCUgcucgggggUCUCGGCGg---- -3'
miRNA:   3'- aCUGCgUGGCGGA---------AGAGCCGCaaccu -5'
19027 5' -57.1 NC_004684.1 + 46624 0.67 0.625515
Target:  5'- gGGC-CACCGCC-UC-CGGUG-UGGAc -3'
miRNA:   3'- aCUGcGUGGCGGaAGaGCCGCaACCU- -5'
19027 5' -57.1 NC_004684.1 + 61696 0.67 0.625515
Target:  5'- gGGCGCGCUGCUccacCGGCGUcaGGAu -3'
miRNA:   3'- aCUGCGUGGCGGaagaGCCGCAa-CCU- -5'
19027 5' -57.1 NC_004684.1 + 11823 0.67 0.614804
Target:  5'- -aGCGCGCCGCUgUC-CGGCGacUGGc -3'
miRNA:   3'- acUGCGUGGCGGaAGaGCCGCa-ACCu -5'
19027 5' -57.1 NC_004684.1 + 47596 0.67 0.593434
Target:  5'- cGGCGauguaggccgcaCACCGCCgucgguaCUCGGCGUcggccuugucgUGGAc -3'
miRNA:   3'- aCUGC------------GUGGCGGaa-----GAGCCGCA-----------ACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.