miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19028 3' -60.8 NC_004684.1 + 2861 0.66 0.501238
Target:  5'- aGGCCGcCGaGC-CGCUGgGCgucaucGGUGCc -3'
miRNA:   3'- aCCGGCuGCgCGuGUGACgCG------CCACG- -5'
19028 3' -60.8 NC_004684.1 + 6372 0.66 0.501238
Target:  5'- aUGGCCuGCGCGuUGCGCaGCGUGuugGCg -3'
miRNA:   3'- -ACCGGcUGCGC-GUGUGaCGCGCca-CG- -5'
19028 3' -60.8 NC_004684.1 + 42214 0.66 0.501238
Target:  5'- gUGGCCGACGUGgC-CGCcgGUGuCGGcaccgGCg -3'
miRNA:   3'- -ACCGGCUGCGC-GuGUGa-CGC-GCCa----CG- -5'
19028 3' -60.8 NC_004684.1 + 55465 0.66 0.501238
Target:  5'- aUGGCCagcgGACgGCcCugGCUGUcgGUGGUGCc -3'
miRNA:   3'- -ACCGG----CUG-CGcGugUGACG--CGCCACG- -5'
19028 3' -60.8 NC_004684.1 + 9887 0.66 0.501238
Target:  5'- gGGauCCGGCGCagGCAC-CUGCguGCGGcGCu -3'
miRNA:   3'- aCC--GGCUGCG--CGUGuGACG--CGCCaCG- -5'
19028 3' -60.8 NC_004684.1 + 18418 0.66 0.501238
Target:  5'- cGGcCCGGCGgGCGCACcG-GCGGccgacgugGCu -3'
miRNA:   3'- aCC-GGCUGCgCGUGUGaCgCGCCa-------CG- -5'
19028 3' -60.8 NC_004684.1 + 37060 0.66 0.501238
Target:  5'- -uGCUGGCGCaGCAgauCGcCUGCcuguucGCGGUGCg -3'
miRNA:   3'- acCGGCUGCG-CGU---GU-GACG------CGCCACG- -5'
19028 3' -60.8 NC_004684.1 + 43754 0.66 0.501238
Target:  5'- cGGCUGACG-GUAC-CgGCGUGGUcagGCc -3'
miRNA:   3'- aCCGGCUGCgCGUGuGaCGCGCCA---CG- -5'
19028 3' -60.8 NC_004684.1 + 65416 0.66 0.501238
Target:  5'- cGaGUUcGCGCGCcagGCGCUGCGCuggcGUGCg -3'
miRNA:   3'- aC-CGGcUGCGCG---UGUGACGCGc---CACG- -5'
19028 3' -60.8 NC_004684.1 + 19617 0.66 0.501238
Target:  5'- cUGGCCGACuGaCGCACuACcggggGCGCGuccgGCc -3'
miRNA:   3'- -ACCGGCUG-C-GCGUG-UGa----CGCGCca--CG- -5'
19028 3' -60.8 NC_004684.1 + 52021 0.66 0.501238
Target:  5'- -aGCCGAUcaccaGCGCGCGCUcCGCGaugGCg -3'
miRNA:   3'- acCGGCUG-----CGCGUGUGAcGCGCca-CG- -5'
19028 3' -60.8 NC_004684.1 + 42413 0.66 0.495327
Target:  5'- cGcGCCGACGCGgGCcaagguaugggcaggACUG-GCGGUcaucGCg -3'
miRNA:   3'- aC-CGGCUGCGCgUG---------------UGACgCGCCA----CG- -5'
19028 3' -60.8 NC_004684.1 + 46293 0.66 0.491403
Target:  5'- cGGCCGAgCGCGU-UGCgGCGCuuggcGUGCg -3'
miRNA:   3'- aCCGGCU-GCGCGuGUGaCGCGc----CACG- -5'
19028 3' -60.8 NC_004684.1 + 50667 0.66 0.491403
Target:  5'- cGGaCCaGGCGUGCGCcCgGUGCcGUGCa -3'
miRNA:   3'- aCC-GG-CUGCGCGUGuGaCGCGcCACG- -5'
19028 3' -60.8 NC_004684.1 + 51247 0.66 0.491403
Target:  5'- cGGUCGAUGcCGCACGC-GCGCa---- -3'
miRNA:   3'- aCCGGCUGC-GCGUGUGaCGCGccacg -5'
19028 3' -60.8 NC_004684.1 + 29677 0.66 0.491403
Target:  5'- cGGCCGACcagacCGCGCG-UGCGCGcGUc- -3'
miRNA:   3'- aCCGGCUGc----GCGUGUgACGCGC-CAcg -5'
19028 3' -60.8 NC_004684.1 + 55777 0.66 0.491403
Target:  5'- cGGCCGACG-GC-CA--GCuCGGUGCc -3'
miRNA:   3'- aCCGGCUGCgCGuGUgaCGcGCCACG- -5'
19028 3' -60.8 NC_004684.1 + 3629 0.66 0.491403
Target:  5'- gUGGCCGaaGCGCGC-CACcugggucaUGC-CGGUcgGCa -3'
miRNA:   3'- -ACCGGC--UGCGCGuGUG--------ACGcGCCA--CG- -5'
19028 3' -60.8 NC_004684.1 + 61672 0.66 0.491403
Target:  5'- aGGUguGCGCcuGCACGCcauugGCGuCGGUGCc -3'
miRNA:   3'- aCCGgcUGCG--CGUGUGa----CGC-GCCACG- -5'
19028 3' -60.8 NC_004684.1 + 65138 0.66 0.491403
Target:  5'- -cGCCGcCGCGCugAUcaGCGUGGcguUGCg -3'
miRNA:   3'- acCGGCuGCGCGugUGa-CGCGCC---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.