miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19029 3' -58.3 NC_004684.1 + 1715 0.66 0.665574
Target:  5'- gCAGGC-ACc-GGCCaGUGCCgCGACCu -3'
miRNA:   3'- -GUUUGcUGcaCCGGcCACGGgGCUGG- -5'
19029 3' -58.3 NC_004684.1 + 59548 0.66 0.665574
Target:  5'- gCGAACGAUGcguagugaGGUgGGUGCCaCGACg -3'
miRNA:   3'- -GUUUGCUGCa-------CCGgCCACGGgGCUGg -5'
19029 3' -58.3 NC_004684.1 + 66283 0.66 0.665574
Target:  5'- gCGGACGgccACGUuGCgGGUGCCCgaCGGCa -3'
miRNA:   3'- -GUUUGC---UGCAcCGgCCACGGG--GCUGg -5'
19029 3' -58.3 NC_004684.1 + 54967 0.66 0.665574
Target:  5'- --cGCGGgGUGaaCGGgugGCCgCCGACCa -3'
miRNA:   3'- guuUGCUgCACcgGCCa--CGG-GGCUGG- -5'
19029 3' -58.3 NC_004684.1 + 18459 0.66 0.665574
Target:  5'- aGGACGACGgcaccGaGCUGGUGCUgucgguguCCGGCa -3'
miRNA:   3'- gUUUGCUGCa----C-CGGCCACGG--------GGCUGg -5'
19029 3' -58.3 NC_004684.1 + 41335 0.66 0.665574
Target:  5'- --cGCGACcgccgacGGCCGG-GCCaaGGCCa -3'
miRNA:   3'- guuUGCUGca-----CCGGCCaCGGggCUGG- -5'
19029 3' -58.3 NC_004684.1 + 39759 0.66 0.665574
Target:  5'- gAGACcGgGUGGCaUGGcGUCCUGGCCg -3'
miRNA:   3'- gUUUGcUgCACCG-GCCaCGGGGCUGG- -5'
19029 3' -58.3 NC_004684.1 + 54031 0.66 0.665574
Target:  5'- -cGGCcuuCGUGGCgGGUGUgCCCG-CCg -3'
miRNA:   3'- guUUGcu-GCACCGgCCACG-GGGCuGG- -5'
19029 3' -58.3 NC_004684.1 + 42888 0.66 0.665574
Target:  5'- cCGAACG-CGcGGCCcugcGGcaccGCCCCGGCg -3'
miRNA:   3'- -GUUUGCuGCaCCGG----CCa---CGGGGCUGg -5'
19029 3' -58.3 NC_004684.1 + 16068 0.66 0.655089
Target:  5'- -cGAUGGCGcugaUGGCCGGUGaccgggaguUCCUGGCa -3'
miRNA:   3'- guUUGCUGC----ACCGGCCAC---------GGGGCUGg -5'
19029 3' -58.3 NC_004684.1 + 2703 0.66 0.655089
Target:  5'- ---cCGGCcUGGCCGGUGCCgggGGCa -3'
miRNA:   3'- guuuGCUGcACCGGCCACGGgg-CUGg -5'
19029 3' -58.3 NC_004684.1 + 1039 0.66 0.655089
Target:  5'- --cGCGuCGcccUGGCCGcccGCCCCGGCg -3'
miRNA:   3'- guuUGCuGC---ACCGGCca-CGGGGCUGg -5'
19029 3' -58.3 NC_004684.1 + 4161 0.66 0.655089
Target:  5'- -cGugGACGcgaucaUGGcCCGGuUGCgCCCGGCg -3'
miRNA:   3'- guUugCUGC------ACC-GGCC-ACG-GGGCUGg -5'
19029 3' -58.3 NC_004684.1 + 48450 0.66 0.655089
Target:  5'- ---cCGACcucgGUGGCCGaGUucuCCUCGACCg -3'
miRNA:   3'- guuuGCUG----CACCGGC-CAc--GGGGCUGG- -5'
19029 3' -58.3 NC_004684.1 + 19765 0.66 0.655089
Target:  5'- --cGCGGCcu-GCCGGUGCCC--GCCg -3'
miRNA:   3'- guuUGCUGcacCGGCCACGGGgcUGG- -5'
19029 3' -58.3 NC_004684.1 + 65028 0.66 0.654039
Target:  5'- aUAGGCGAccuCGUGGCUgaGGUcGUCCCaggagauGACCg -3'
miRNA:   3'- -GUUUGCU---GCACCGG--CCA-CGGGG-------CUGG- -5'
19029 3' -58.3 NC_004684.1 + 61338 0.66 0.654039
Target:  5'- --cGCGGCGUGGuuGGUcagcuggGCCgCGAg- -3'
miRNA:   3'- guuUGCUGCACCggCCA-------CGGgGCUgg -5'
19029 3' -58.3 NC_004684.1 + 42961 0.66 0.645636
Target:  5'- -uGugGuuGUGGCCGGggagacaaguacaacGCCCCcACCu -3'
miRNA:   3'- guUugCugCACCGGCCa--------------CGGGGcUGG- -5'
19029 3' -58.3 NC_004684.1 + 24524 0.66 0.644584
Target:  5'- cCGGGCGuGCGgcGGCCuGGUugGCCCC-ACCg -3'
miRNA:   3'- -GUUUGC-UGCa-CCGG-CCA--CGGGGcUGG- -5'
19029 3' -58.3 NC_004684.1 + 55451 0.66 0.644584
Target:  5'- cCAGGCuGGCGaccaUGGCCagcGGacgGCCCUGGCUg -3'
miRNA:   3'- -GUUUG-CUGC----ACCGG---CCa--CGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.