miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19029 5' -58 NC_004684.1 + 39230 0.66 0.622846
Target:  5'- --cGCUGAUcuugcGCGCCGa-CGGGUCCa -3'
miRNA:   3'- cauCGGCUAu----CGCGGCgaGUCCAGGa -5'
19029 5' -58 NC_004684.1 + 65758 0.66 0.621769
Target:  5'- gGgcGCCGGUAcccgguuGCGCCGgUgCAGGUgCCg -3'
miRNA:   3'- -CauCGGCUAU-------CGCGGCgA-GUCCA-GGa -5'
19029 5' -58 NC_004684.1 + 20015 0.66 0.612085
Target:  5'- -aGGCUGGcucAGCGCCacuaccGC-CGGGUCCUa -3'
miRNA:   3'- caUCGGCUa--UCGCGG------CGaGUCCAGGA- -5'
19029 5' -58 NC_004684.1 + 65103 0.66 0.612085
Target:  5'- -gAGCagGGUGGCGUCGUccgcgUCgAGGUCCa -3'
miRNA:   3'- caUCGg-CUAUCGCGGCG-----AG-UCCAGGa -5'
19029 5' -58 NC_004684.1 + 61430 0.66 0.612085
Target:  5'- -cGGCCGGUcgcucaccGGCGCgGC-CAGGUUg- -3'
miRNA:   3'- caUCGGCUA--------UCGCGgCGaGUCCAGga -5'
19029 5' -58 NC_004684.1 + 10279 0.66 0.612085
Target:  5'- --uGCUGccAGCgGUCGCUCcAGGUCCa -3'
miRNA:   3'- cauCGGCuaUCG-CGGCGAG-UCCAGGa -5'
19029 5' -58 NC_004684.1 + 65243 0.66 0.612085
Target:  5'- --cGCCGAguucaccgacGCGCCGaacgcacgCAGGUCCa -3'
miRNA:   3'- cauCGGCUau--------CGCGGCga------GUCCAGGa -5'
19029 5' -58 NC_004684.1 + 32944 0.66 0.61101
Target:  5'- -gGGCagGAUGG-GCCGCUCGGGcagcacacugcugUCCUc -3'
miRNA:   3'- caUCGg-CUAUCgCGGCGAGUCC-------------AGGA- -5'
19029 5' -58 NC_004684.1 + 54917 0.66 0.61101
Target:  5'- gGUGGCCGAgcgucgcaaagAGUGCUucgagcgGCUCAaGUCCUg -3'
miRNA:   3'- -CAUCGGCUa----------UCGCGG-------CGAGUcCAGGA- -5'
19029 5' -58 NC_004684.1 + 51170 0.66 0.60134
Target:  5'- uGUGGCCGAU-GCGCCGggCcauGGaCCg -3'
miRNA:   3'- -CAUCGGCUAuCGCGGCgaGu--CCaGGa -5'
19029 5' -58 NC_004684.1 + 52018 0.66 0.593834
Target:  5'- cGUAGCCGAUcaccAGCGCgCGCUCcgcgauggcgacaAaccgguugugcguauGGUCCa -3'
miRNA:   3'- -CAUCGGCUA----UCGCG-GCGAG-------------U---------------CCAGGa -5'
19029 5' -58 NC_004684.1 + 12875 0.66 0.579935
Target:  5'- --cGCCGA-GGcCGCCGC-CGGGgagCCUg -3'
miRNA:   3'- cauCGGCUaUC-GCGGCGaGUCCa--GGA- -5'
19029 5' -58 NC_004684.1 + 3033 0.66 0.579935
Target:  5'- -gAGCUGAccGCGCCGaC-CGGGUUCa -3'
miRNA:   3'- caUCGGCUauCGCGGC-GaGUCCAGGa -5'
19029 5' -58 NC_004684.1 + 48101 0.66 0.569291
Target:  5'- -aAGCaCGAUGuCGCCcuGCaUCGGGUCCa -3'
miRNA:   3'- caUCG-GCUAUcGCGG--CG-AGUCCAGGa -5'
19029 5' -58 NC_004684.1 + 34725 0.67 0.558696
Target:  5'- cGUAGCC-AUGcCGCCGC-CAGG-CCUu -3'
miRNA:   3'- -CAUCGGcUAUcGCGGCGaGUCCaGGA- -5'
19029 5' -58 NC_004684.1 + 62627 0.67 0.558696
Target:  5'- -gAGCCG-UGGCGCUugaUCAGGUCg- -3'
miRNA:   3'- caUCGGCuAUCGCGGcg-AGUCCAGga -5'
19029 5' -58 NC_004684.1 + 45750 0.67 0.558696
Target:  5'- --cGCCGAgAGCGCCuGCUC-GGUUg- -3'
miRNA:   3'- cauCGGCUaUCGCGG-CGAGuCCAGga -5'
19029 5' -58 NC_004684.1 + 54052 0.67 0.548157
Target:  5'- -aGGCUGAUcAG-GUCGgUCGGGUCCg -3'
miRNA:   3'- caUCGGCUA-UCgCGGCgAGUCCAGGa -5'
19029 5' -58 NC_004684.1 + 64695 0.67 0.537681
Target:  5'- -cAGUCGAgcauguUGGCgGCCGCcagggccuccaUCGGGUCCa -3'
miRNA:   3'- caUCGGCU------AUCG-CGGCG-----------AGUCCAGGa -5'
19029 5' -58 NC_004684.1 + 10141 0.67 0.537681
Target:  5'- -gGGCCGAcGGUGCCGCccgccCAGGUg-- -3'
miRNA:   3'- caUCGGCUaUCGCGGCGa----GUCCAgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.