miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19030 3' -53.2 NC_004684.1 + 44327 0.66 0.862164
Target:  5'- cGUCGAACCGguuggccaGCuUgGCCagGCCGUCAc -3'
miRNA:   3'- -CAGUUUGGUg-------UGuAgCGGa-CGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 60528 0.66 0.862164
Target:  5'- -gCAGGCUgaucuCGCcgCGCCcggUGCCGUCGa -3'
miRNA:   3'- caGUUUGGu----GUGuaGCGG---ACGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 24839 0.66 0.862164
Target:  5'- ---cGGCCACGCcgaaGCCgaacGCCGUCAg -3'
miRNA:   3'- caguUUGGUGUGuag-CGGa---CGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 47537 0.66 0.857176
Target:  5'- uGUCugcACCACggugcgcggcaaccgGCAUgCGCC-GCCGUCAc -3'
miRNA:   3'- -CAGuu-UGGUG---------------UGUA-GCGGaCGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 11674 0.66 0.853803
Target:  5'- aUCugcGCCAaACGUCGCCggauacgGCUGUCGc -3'
miRNA:   3'- cAGuu-UGGUgUGUAGCGGa------CGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 58538 0.66 0.845204
Target:  5'- cUCAGGCgACACGUCcagGCCcaugGCCaGUCGg -3'
miRNA:   3'- cAGUUUGgUGUGUAG---CGGa---CGG-CAGU- -5'
19030 3' -53.2 NC_004684.1 + 41012 0.66 0.845204
Target:  5'- -cCAGAUCGCcgccgACGUUGCCggUGCCGUUg -3'
miRNA:   3'- caGUUUGGUG-----UGUAGCGG--ACGGCAGu -5'
19030 3' -53.2 NC_004684.1 + 46083 0.66 0.836379
Target:  5'- -cCGGACCAcCGCcUCGCCUG-CGUUg -3'
miRNA:   3'- caGUUUGGU-GUGuAGCGGACgGCAGu -5'
19030 3' -53.2 NC_004684.1 + 1078 0.67 0.818083
Target:  5'- uUCGAgcGCUACuACG-CGCCgcUGCCGUCGg -3'
miRNA:   3'- cAGUU--UGGUG-UGUaGCGG--ACGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 61233 0.67 0.808632
Target:  5'- ----cGCCGCACGcUgGCCgccGCCGUCGa -3'
miRNA:   3'- caguuUGGUGUGU-AgCGGa--CGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 19571 0.67 0.789175
Target:  5'- -cCGGGCCugGCGUCGugcaCCUGCCcaGUCc -3'
miRNA:   3'- caGUUUGGugUGUAGC----GGACGG--CAGu -5'
19030 3' -53.2 NC_004684.1 + 13479 0.68 0.758772
Target:  5'- -----cCCGCACcUCGCCUGacccCCGUCAc -3'
miRNA:   3'- caguuuGGUGUGuAGCGGAC----GGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 7848 0.68 0.758772
Target:  5'- -cCucACUACGCAUCGUUcGCCGUCc -3'
miRNA:   3'- caGuuUGGUGUGUAGCGGaCGGCAGu -5'
19030 3' -53.2 NC_004684.1 + 60584 0.68 0.748359
Target:  5'- -cCAGGCCGacgGCGUCGUagugGCCGUCGu -3'
miRNA:   3'- caGUUUGGUg--UGUAGCGga--CGGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 49101 0.68 0.748359
Target:  5'- -gCAGguGCCACAgGUCGCCgucGgCGUCGg -3'
miRNA:   3'- caGUU--UGGUGUgUAGCGGa--CgGCAGU- -5'
19030 3' -53.2 NC_004684.1 + 56629 0.68 0.737826
Target:  5'- uGUCGcgGGCaCGCACGUUGCCUGCuCGc-- -3'
miRNA:   3'- -CAGU--UUG-GUGUGUAGCGGACG-GCagu -5'
19030 3' -53.2 NC_004684.1 + 8563 0.68 0.716446
Target:  5'- uUCGuGCCGCACGagaugaGCCUGCCGa-- -3'
miRNA:   3'- cAGUuUGGUGUGUag----CGGACGGCagu -5'
19030 3' -53.2 NC_004684.1 + 23941 0.69 0.705624
Target:  5'- --gGAGCUGCGCGgaccCGCCUGCCGa-- -3'
miRNA:   3'- cagUUUGGUGUGUa---GCGGACGGCagu -5'
19030 3' -53.2 NC_004684.1 + 17858 0.69 0.694728
Target:  5'- cGUCAccGACCGCACGcCGCCUGagCG-CAa -3'
miRNA:   3'- -CAGU--UUGGUGUGUaGCGGACg-GCaGU- -5'
19030 3' -53.2 NC_004684.1 + 32573 0.69 0.694728
Target:  5'- -gCAGACCGC-CGUCGUCgGUgGUCAg -3'
miRNA:   3'- caGUUUGGUGuGUAGCGGaCGgCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.