miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19030 5' -57.4 NC_004684.1 + 9784 0.66 0.663991
Target:  5'- gGCCGUaccGCUCGuGCACGGUCaccaccguCGGUa -3'
miRNA:   3'- -UGGUAgc-CGAGCuCGUGCUAG--------GCCAa -5'
19030 5' -57.4 NC_004684.1 + 50022 0.66 0.663991
Target:  5'- cACCGUCGGCggcAGCGUGG-CCGGUg -3'
miRNA:   3'- -UGGUAGCCGagcUCGUGCUaGGCCAa -5'
19030 5' -57.4 NC_004684.1 + 55799 0.66 0.663991
Target:  5'- gACCGgguggucCGGUgagcgcgugCGAGCACGGggugCCGGUg -3'
miRNA:   3'- -UGGUa------GCCGa--------GCUCGUGCUa---GGCCAa -5'
19030 5' -57.4 NC_004684.1 + 10626 0.66 0.653242
Target:  5'- aGCCGUCGGCgUCGucacCACcguGGUCUGGUg -3'
miRNA:   3'- -UGGUAGCCG-AGCuc--GUG---CUAGGCCAa -5'
19030 5' -57.4 NC_004684.1 + 60317 0.66 0.652166
Target:  5'- gGCC-UCGGCaaugcguUCGAGCGCGAUCa---- -3'
miRNA:   3'- -UGGuAGCCG-------AGCUCGUGCUAGgccaa -5'
19030 5' -57.4 NC_004684.1 + 27261 0.66 0.642475
Target:  5'- cCUGUCGGCguUCG-GCACGGUgaCCGGg- -3'
miRNA:   3'- uGGUAGCCG--AGCuCGUGCUA--GGCCaa -5'
19030 5' -57.4 NC_004684.1 + 6707 0.66 0.642475
Target:  5'- cACCGUCGGCgCGAGCAag--CCGa-- -3'
miRNA:   3'- -UGGUAGCCGaGCUCGUgcuaGGCcaa -5'
19030 5' -57.4 NC_004684.1 + 13561 0.66 0.642475
Target:  5'- gGCCAUCGGCUacugcgucgaggCGGGCAUucUCCaGGa- -3'
miRNA:   3'- -UGGUAGCCGA------------GCUCGUGcuAGG-CCaa -5'
19030 5' -57.4 NC_004684.1 + 22442 0.66 0.642475
Target:  5'- cGCCGUCGGCgCG-GCGgCGAUCCc--- -3'
miRNA:   3'- -UGGUAGCCGaGCuCGU-GCUAGGccaa -5'
19030 5' -57.4 NC_004684.1 + 4016 0.66 0.631699
Target:  5'- cGCCAUCGGCU--GGCGCGucggccgCuCGGUg -3'
miRNA:   3'- -UGGUAGCCGAgcUCGUGCua-----G-GCCAa -5'
19030 5' -57.4 NC_004684.1 + 2769 0.66 0.631699
Target:  5'- cGCCGaCGGCaaCGAGCugGAgguucagCCGGa- -3'
miRNA:   3'- -UGGUaGCCGa-GCUCGugCUa------GGCCaa -5'
19030 5' -57.4 NC_004684.1 + 18043 0.66 0.620923
Target:  5'- gACCggCGGCgaaggCGAGgACGAcugcCCGGUg -3'
miRNA:   3'- -UGGuaGCCGa----GCUCgUGCUa---GGCCAa -5'
19030 5' -57.4 NC_004684.1 + 43407 0.66 0.610157
Target:  5'- gGCCuggcgaCGGCUUGAGCgaGCcGUCCGGg- -3'
miRNA:   3'- -UGGua----GCCGAGCUCG--UGcUAGGCCaa -5'
19030 5' -57.4 NC_004684.1 + 57241 0.66 0.60693
Target:  5'- gGCCAgcggCGGCUggcUGAGCACGAggucagcggcguucUCCaGGUc -3'
miRNA:   3'- -UGGUa---GCCGA---GCUCGUGCU--------------AGG-CCAa -5'
19030 5' -57.4 NC_004684.1 + 21812 0.67 0.588688
Target:  5'- gACgGUCGGCgaacucaUGGGCGCGAUcagCCGGg- -3'
miRNA:   3'- -UGgUAGCCGa------GCUCGUGCUA---GGCCaa -5'
19030 5' -57.4 NC_004684.1 + 51669 0.67 0.587617
Target:  5'- gGCCcuugcugGUCGGUgucuccggGAGCACGAUgCCGGUg -3'
miRNA:   3'- -UGG-------UAGCCGag------CUCGUGCUA-GGCCAa -5'
19030 5' -57.4 NC_004684.1 + 15362 0.67 0.578001
Target:  5'- cGCCAUC-GCg-GAGCGCGcgCUGGUg -3'
miRNA:   3'- -UGGUAGcCGagCUCGUGCuaGGCCAa -5'
19030 5' -57.4 NC_004684.1 + 34702 0.67 0.567358
Target:  5'- aACUucCGGCUCGuguGGUcCGAUCCGGUc -3'
miRNA:   3'- -UGGuaGCCGAGC---UCGuGCUAGGCCAa -5'
19030 5' -57.4 NC_004684.1 + 13180 0.67 0.567358
Target:  5'- gGCCGaccUCGGCccCGAGCAgGccgCCGGUUu -3'
miRNA:   3'- -UGGU---AGCCGa-GCUCGUgCua-GGCCAA- -5'
19030 5' -57.4 NC_004684.1 + 21257 0.67 0.556765
Target:  5'- cACCAUCGGCcUGGGCGaugUGAUCCagaaGGUc -3'
miRNA:   3'- -UGGUAGCCGaGCUCGU---GCUAGG----CCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.