miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19031 5' -57.6 NC_004684.1 + 66816 0.66 0.646286
Target:  5'- gGUCUCGACGGUGgccUCGGCCuuGUCc-- -3'
miRNA:   3'- -CAGAGUUGCCAC---GGCUGGugCGGcaa -5'
19031 5' -57.6 NC_004684.1 + 4794 0.66 0.646286
Target:  5'- -cCUCGgcGCGGUgGCCGACCGCaaCGg- -3'
miRNA:   3'- caGAGU--UGCCA-CGGCUGGUGcgGCaa -5'
19031 5' -57.6 NC_004684.1 + 45677 0.66 0.646286
Target:  5'- -gCUUGGCGaugaacagGCCGACCAUGUCGUUc -3'
miRNA:   3'- caGAGUUGCca------CGGCUGGUGCGGCAA- -5'
19031 5' -57.6 NC_004684.1 + 20759 0.66 0.646286
Target:  5'- ----aGGCGGUGCCGuCCACaCCGg- -3'
miRNA:   3'- cagagUUGCCACGGCuGGUGcGGCaa -5'
19031 5' -57.6 NC_004684.1 + 23707 0.66 0.635528
Target:  5'- ----aGGCGGUGUCgGACCucgACGCCGUg -3'
miRNA:   3'- cagagUUGCCACGG-CUGG---UGCGGCAa -5'
19031 5' -57.6 NC_004684.1 + 8436 0.66 0.635528
Target:  5'- -gCUCGGCGGacaggGCCcggcgcaaGGCCugGCUGUUg -3'
miRNA:   3'- caGAGUUGCCa----CGG--------CUGGugCGGCAA- -5'
19031 5' -57.6 NC_004684.1 + 25865 0.66 0.635528
Target:  5'- -gUUCAACGGccUCGGCCAgGCCGg- -3'
miRNA:   3'- caGAGUUGCCacGGCUGGUgCGGCaa -5'
19031 5' -57.6 NC_004684.1 + 3945 0.66 0.624766
Target:  5'- -aCUgGGCGGcgaaGgCGACCACGCUGUc -3'
miRNA:   3'- caGAgUUGCCa---CgGCUGGUGCGGCAa -5'
19031 5' -57.6 NC_004684.1 + 64037 0.66 0.61401
Target:  5'- gGUgUCGGCGGUGUCGGCCuCGaacaccUCGUUg -3'
miRNA:   3'- -CAgAGUUGCCACGGCUGGuGC------GGCAA- -5'
19031 5' -57.6 NC_004684.1 + 22830 0.66 0.60327
Target:  5'- uUCcCGGCGGUGCaGGCCGgGCUGg- -3'
miRNA:   3'- cAGaGUUGCCACGgCUGGUgCGGCaa -5'
19031 5' -57.6 NC_004684.1 + 23196 0.66 0.60327
Target:  5'- --gUCGACaaguaccgcgaGGUGCUGGCgCGCGCCGg- -3'
miRNA:   3'- cagAGUUG-----------CCACGGCUG-GUGCGGCaa -5'
19031 5' -57.6 NC_004684.1 + 2985 0.67 0.592553
Target:  5'- ---cCAACGGguugagGCCaucACCGCGCCGUg -3'
miRNA:   3'- cagaGUUGCCa-----CGGc--UGGUGCGGCAa -5'
19031 5' -57.6 NC_004684.1 + 17732 0.67 0.592553
Target:  5'- ----gAAUGG-GCCGAguCCACGCCGUg -3'
miRNA:   3'- cagagUUGCCaCGGCU--GGUGCGGCAa -5'
19031 5' -57.6 NC_004684.1 + 42583 0.67 0.592553
Target:  5'- uGUCcugcgCGAUGuUGCCGACCGCcuugGCCGUa -3'
miRNA:   3'- -CAGa----GUUGCcACGGCUGGUG----CGGCAa -5'
19031 5' -57.6 NC_004684.1 + 52221 0.67 0.581868
Target:  5'- aUCUCccCGGcGUCGAUCAgGCCGUg -3'
miRNA:   3'- cAGAGuuGCCaCGGCUGGUgCGGCAa -5'
19031 5' -57.6 NC_004684.1 + 14474 0.67 0.581868
Target:  5'- gGUCgaUCGAggUGGuUGCCGguACCACGCCGg- -3'
miRNA:   3'- -CAG--AGUU--GCC-ACGGC--UGGUGCGGCaa -5'
19031 5' -57.6 NC_004684.1 + 58021 0.67 0.581868
Target:  5'- cGUCgUCcuCGGUGuCCGGCUccucGCGCCGg- -3'
miRNA:   3'- -CAG-AGuuGCCAC-GGCUGG----UGCGGCaa -5'
19031 5' -57.6 NC_004684.1 + 55457 0.67 0.581868
Target:  5'- uGUCgcCAagcGCGGUGaaGGCCugGCCGa- -3'
miRNA:   3'- -CAGa-GU---UGCCACggCUGGugCGGCaa -5'
19031 5' -57.6 NC_004684.1 + 56722 0.67 0.571223
Target:  5'- ----uGGCGGUGCUGauGCCGCGCCa-- -3'
miRNA:   3'- cagagUUGCCACGGC--UGGUGCGGcaa -5'
19031 5' -57.6 NC_004684.1 + 21135 0.67 0.571223
Target:  5'- uGUC-CGGCGGUGUC-ACCGCGCaCGc- -3'
miRNA:   3'- -CAGaGUUGCCACGGcUGGUGCG-GCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.