miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19032 3' -59.9 NC_004684.1 + 30504 0.66 0.543371
Target:  5'- --aGUCCGAgCUGGUugccgaccacggccaCCAGCAugUCGCCu -3'
miRNA:   3'- gaaCGGGCUaGACCG---------------GGUCGU--GGCGG- -5'
19032 3' -59.9 NC_004684.1 + 24537 0.66 0.539266
Target:  5'- --gGCCUGGU-UGGCCC--CACCGCg -3'
miRNA:   3'- gaaCGGGCUAgACCGGGucGUGGCGg -5'
19032 3' -59.9 NC_004684.1 + 43208 0.66 0.539266
Target:  5'- --gGCaCCGGcauUUUGGgCggCGGCACCGCCu -3'
miRNA:   3'- gaaCG-GGCU---AGACCgG--GUCGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 33078 0.66 0.539266
Target:  5'- -cUGCUCaAUCUguccGGCgUGGCGCUGCCg -3'
miRNA:   3'- gaACGGGcUAGA----CCGgGUCGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 5874 0.66 0.539266
Target:  5'- --cGCCUGcacgucacugCUGGCgCgcaucgAGCGCCGCCg -3'
miRNA:   3'- gaaCGGGCua--------GACCGgG------UCGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 26949 0.66 0.539266
Target:  5'- --cGuCCCGAUUgccaaggcggUGGCCaa-CGCCGCCa -3'
miRNA:   3'- gaaC-GGGCUAG----------ACCGGgucGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 50397 0.66 0.539266
Target:  5'- --gGCCauAUaaaGGCCCAGCAaCGCCg -3'
miRNA:   3'- gaaCGGgcUAga-CCGGGUCGUgGCGG- -5'
19032 3' -59.9 NC_004684.1 + 30846 0.66 0.52905
Target:  5'- -gUGCCgGAa-UGcGCCCGGUACuCGCUg -3'
miRNA:   3'- gaACGGgCUagAC-CGGGUCGUG-GCGG- -5'
19032 3' -59.9 NC_004684.1 + 58978 0.66 0.52905
Target:  5'- -cUG-CCGcgCUGGUuaccguUCGGCAUCGCCg -3'
miRNA:   3'- gaACgGGCuaGACCG------GGUCGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 10974 0.66 0.52905
Target:  5'- cCUUGacCCCGAgagcaUGGCCCGGUaguugGCgCGCUg -3'
miRNA:   3'- -GAAC--GGGCUag---ACCGGGUCG-----UG-GCGG- -5'
19032 3' -59.9 NC_004684.1 + 58366 0.66 0.52905
Target:  5'- --cGCgCCGGUUgccGCCCcgcacGGCACCGCg -3'
miRNA:   3'- gaaCG-GGCUAGac-CGGG-----UCGUGGCGg -5'
19032 3' -59.9 NC_004684.1 + 57899 0.66 0.518907
Target:  5'- -gUGgCCGggCugaaggUGGCCgGGCugACCGCCg -3'
miRNA:   3'- gaACgGGCuaG------ACCGGgUCG--UGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 61532 0.66 0.518907
Target:  5'- -cUGCCCGGcCUGccagucgcacGCCUGGUccucgaacACCGCCa -3'
miRNA:   3'- gaACGGGCUaGAC----------CGGGUCG--------UGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 4573 0.66 0.518907
Target:  5'- ---aCCCGGUC-GGCCUgaaAGCucccCCGCCu -3'
miRNA:   3'- gaacGGGCUAGaCCGGG---UCGu---GGCGG- -5'
19032 3' -59.9 NC_004684.1 + 55611 0.66 0.518907
Target:  5'- --gGCCUGGUC-GGCCCacGGgGCCaCCa -3'
miRNA:   3'- gaaCGGGCUAGaCCGGG--UCgUGGcGG- -5'
19032 3' -59.9 NC_004684.1 + 48730 0.66 0.518907
Target:  5'- gCUUGCCgguggCGAUgUGGCaggccauguCCAGCGCCacgcuggacuuGCCg -3'
miRNA:   3'- -GAACGG-----GCUAgACCG---------GGUCGUGG-----------CGG- -5'
19032 3' -59.9 NC_004684.1 + 15823 0.66 0.518907
Target:  5'- --cGaCCCGG--UGGCgCgCGGCAUCGCCa -3'
miRNA:   3'- gaaC-GGGCUagACCG-G-GUCGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 18379 0.66 0.514871
Target:  5'- -gUGgCCGAUCUguucagcggggucgGGCCCGGCcagcagggcaccgACgCGCCc -3'
miRNA:   3'- gaACgGGCUAGA--------------CCGGGUCG-------------UG-GCGG- -5'
19032 3' -59.9 NC_004684.1 + 62259 0.66 0.508841
Target:  5'- -cUGCCCGcUCaugcggUGGCCUucagcagguccaGGCGCUGCUc -3'
miRNA:   3'- gaACGGGCuAG------ACCGGG------------UCGUGGCGG- -5'
19032 3' -59.9 NC_004684.1 + 23678 0.66 0.508841
Target:  5'- --gGCCUGGUC-GGCCCGG-ACCagagcgugGCCu -3'
miRNA:   3'- gaaCGGGCUAGaCCGGGUCgUGG--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.