miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19032 5' -58.6 NC_004684.1 + 46297 0.66 0.5838
Target:  5'- cGAGCGcGUUGcgGCGCUuGGcgugCGCCAg -3'
miRNA:   3'- aCUCGUcCAACa-CGCGGuCCa---GCGGU- -5'
19032 5' -58.6 NC_004684.1 + 47697 0.66 0.5838
Target:  5'- gUGAuGCuGGUUG-GCGC--GGUUGCCAu -3'
miRNA:   3'- -ACU-CGuCCAACaCGCGguCCAGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 61450 0.66 0.573155
Target:  5'- cGGcCAGGUUGgacCGCCcGGUgGCCAg -3'
miRNA:   3'- aCUcGUCCAACac-GCGGuCCAgCGGU- -5'
19032 5' -58.6 NC_004684.1 + 66550 0.66 0.573155
Target:  5'- -cGGUAGGcgUUGUGCGCCucaccGGaauugCGCCAc -3'
miRNA:   3'- acUCGUCC--AACACGCGGu----CCa----GCGGU- -5'
19032 5' -58.6 NC_004684.1 + 10092 0.66 0.572093
Target:  5'- cGGGCAGGgc-UG-GCCGGGgugcggcUCGCCGu -3'
miRNA:   3'- aCUCGUCCaacACgCGGUCC-------AGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 31400 0.66 0.571031
Target:  5'- -cGGCGGGcaccaccccgacUGUGCGCCAGGccugcguggagUCGCUg -3'
miRNA:   3'- acUCGUCCa-----------ACACGCGGUCC-----------AGCGGu -5'
19032 5' -58.6 NC_004684.1 + 52616 0.66 0.562556
Target:  5'- aUGGuCAGGUcG-GUGCCGGGcacgUCGCCAu -3'
miRNA:   3'- -ACUcGUCCAaCaCGCGGUCC----AGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 26579 0.66 0.562556
Target:  5'- cUGGcGCGcGGcgGUGUGCgCGGGuUCGCCAc -3'
miRNA:   3'- -ACU-CGU-CCaaCACGCG-GUCC-AGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 15900 0.66 0.562556
Target:  5'- gUGAcCGGGcgGUGCcaucCgCAGGUCGCCAu -3'
miRNA:   3'- -ACUcGUCCaaCACGc---G-GUCCAGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 24780 0.66 0.562556
Target:  5'- -cGGCGGGggagGUGCCGGGUCgaagguGCCGu -3'
miRNA:   3'- acUCGUCCaacaCGCGGUCCAG------CGGU- -5'
19032 5' -58.6 NC_004684.1 + 66674 0.66 0.55201
Target:  5'- gGGGUAG-UUGgaGCGCCAGGcCGuCCAc -3'
miRNA:   3'- aCUCGUCcAACa-CGCGGUCCaGC-GGU- -5'
19032 5' -58.6 NC_004684.1 + 7266 0.66 0.550959
Target:  5'- cGAGCAGGc----CGCCAGGcgagaccaguucaUCGCCGc -3'
miRNA:   3'- aCUCGUCCaacacGCGGUCC-------------AGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 19543 0.66 0.541525
Target:  5'- --uGCGGGUgcgccgGgcgGUGCCAGGUCuCCGg -3'
miRNA:   3'- acuCGUCCAa-----Ca--CGCGGUCCAGcGGU- -5'
19032 5' -58.6 NC_004684.1 + 60649 0.66 0.541525
Target:  5'- cGAGgGGGcag-GUGCCAGGaugUCGCCu -3'
miRNA:   3'- aCUCgUCCaacaCGCGGUCC---AGCGGu -5'
19032 5' -58.6 NC_004684.1 + 58793 0.66 0.541525
Target:  5'- gGGGcCAGGUUGUcccgGCGgUAGGUgcCGCCu -3'
miRNA:   3'- aCUC-GUCCAACA----CGCgGUCCA--GCGGu -5'
19032 5' -58.6 NC_004684.1 + 16776 0.66 0.541525
Target:  5'- aUGAGCGGGgaccagGUGCGgCgcgucgugugguGGGcgCGCCAu -3'
miRNA:   3'- -ACUCGUCCaa----CACGCgG------------UCCa-GCGGU- -5'
19032 5' -58.6 NC_004684.1 + 45078 0.66 0.541525
Target:  5'- -cGGCuucuGGUUGcGcCGCCAGGagGCCGa -3'
miRNA:   3'- acUCGu---CCAACaC-GCGGUCCagCGGU- -5'
19032 5' -58.6 NC_004684.1 + 47304 0.66 0.531107
Target:  5'- uUGAGCuGGUUG-GcCGUCAccGuGUCGCCGg -3'
miRNA:   3'- -ACUCGuCCAACaC-GCGGU--C-CAGCGGU- -5'
19032 5' -58.6 NC_004684.1 + 19046 0.66 0.531107
Target:  5'- cGGGCAGGUcaugaaGUGCGgCAGGcuggCGUCc -3'
miRNA:   3'- aCUCGUCCAa-----CACGCgGUCCa---GCGGu -5'
19032 5' -58.6 NC_004684.1 + 62792 0.66 0.531107
Target:  5'- aUGAGCAGGUUucGCGucacaCCGGGUgGCgAg -3'
miRNA:   3'- -ACUCGUCCAAcaCGC-----GGUCCAgCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.