miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19033 5' -59 NC_004684.1 + 24212 0.66 0.62802
Target:  5'- uGCCCGacaucgCGCCGAGcGaccuCGGCGGUc- -3'
miRNA:   3'- -CGGGCca----GUGGCUC-Cau--GCCGCCAuc -5'
19033 5' -59 NC_004684.1 + 43026 0.66 0.626975
Target:  5'- uGCCCGGUCAgaGGGuGUugGucuucaaccaguuGCGGgcGg -3'
miRNA:   3'- -CGGGCCAGUggCUC-CAugC-------------CGCCauC- -5'
19033 5' -59 NC_004684.1 + 60221 0.66 0.606076
Target:  5'- gGCCuCGG-CGuuGuAGGUGCacccgcaGGCGGUGGc -3'
miRNA:   3'- -CGG-GCCaGUggC-UCCAUG-------CCGCCAUC- -5'
19033 5' -59 NC_004684.1 + 21909 0.66 0.600862
Target:  5'- uGCCCGacgugcgaccucuacGUCACCGAGuGcgucUGCGGCcuGGUGa -3'
miRNA:   3'- -CGGGC---------------CAGUGGCUC-C----AUGCCG--CCAUc -5'
19033 5' -59 NC_004684.1 + 16738 0.66 0.596695
Target:  5'- cGCCUGGUCcgcACCcccg-ACGGCGGUGu -3'
miRNA:   3'- -CGGGCCAG---UGGcuccaUGCCGCCAUc -5'
19033 5' -59 NC_004684.1 + 12632 0.66 0.596695
Target:  5'- uGCCaUGGUUACCGAcaauacGGcgaacCGGCGGUAu -3'
miRNA:   3'- -CGG-GCCAGUGGCU------CCau---GCCGCCAUc -5'
19033 5' -59 NC_004684.1 + 47069 0.66 0.596695
Target:  5'- uGCCCGGcccaUUGCC-AGGgcaccagaACGGCGGUGc -3'
miRNA:   3'- -CGGGCC----AGUGGcUCCa-------UGCCGCCAUc -5'
19033 5' -59 NC_004684.1 + 28569 0.66 0.596695
Target:  5'- cCCCGc-CACCGGuGUGCGGCGGc-- -3'
miRNA:   3'- cGGGCcaGUGGCUcCAUGCCGCCauc -5'
19033 5' -59 NC_004684.1 + 24505 0.66 0.586297
Target:  5'- --gCGGUCucggugccagagGCCGGGcGUGCGGCGGccUGGu -3'
miRNA:   3'- cggGCCAG------------UGGCUC-CAUGCCGCC--AUC- -5'
19033 5' -59 NC_004684.1 + 6936 0.66 0.586297
Target:  5'- uGCCCGGcaugcUgGCCGAGGUcgaaccCGGCGaGUc- -3'
miRNA:   3'- -CGGGCC-----AgUGGCUCCAu-----GCCGC-CAuc -5'
19033 5' -59 NC_004684.1 + 39391 0.66 0.586297
Target:  5'- gGCCCGaUCACCGcgucGGGUGuCGGCaGUu- -3'
miRNA:   3'- -CGGGCcAGUGGC----UCCAU-GCCGcCAuc -5'
19033 5' -59 NC_004684.1 + 21289 0.66 0.586297
Target:  5'- cGCCCGGccguaUCugCGcaacgcAGGcgaGGCGGUGGu -3'
miRNA:   3'- -CGGGCC-----AGugGC------UCCaugCCGCCAUC- -5'
19033 5' -59 NC_004684.1 + 6054 0.66 0.582147
Target:  5'- aCCUGGccgccaccuacgcCGCCGAGGgcggcggcccgGCGGCGGUGc -3'
miRNA:   3'- cGGGCCa------------GUGGCUCCa----------UGCCGCCAUc -5'
19033 5' -59 NC_004684.1 + 28795 0.66 0.580075
Target:  5'- aCCCGGUU-CCGAgcuGGUGCucgacggugugaccgGGCGGUAc -3'
miRNA:   3'- cGGGCCAGuGGCU---CCAUG---------------CCGCCAUc -5'
19033 5' -59 NC_004684.1 + 7566 0.66 0.575934
Target:  5'- cCCCGGguggCGCU--GGUGCGGCuGGUGc -3'
miRNA:   3'- cGGGCCa---GUGGcuCCAUGCCG-CCAUc -5'
19033 5' -59 NC_004684.1 + 45544 0.66 0.575934
Target:  5'- -aCCGGcgCACCGGGGgACaGGuCGGUGa -3'
miRNA:   3'- cgGGCCa-GUGGCUCCaUG-CC-GCCAUc -5'
19033 5' -59 NC_004684.1 + 43493 0.67 0.565613
Target:  5'- uGCUCGGUCgaGCCGGGG--CGGuCGGg-- -3'
miRNA:   3'- -CGGGCCAG--UGGCUCCauGCC-GCCauc -5'
19033 5' -59 NC_004684.1 + 4297 0.67 0.565613
Target:  5'- cGCCgGGUCGCCGuaauGUagugcuugcACGGCGGc-- -3'
miRNA:   3'- -CGGgCCAGUGGCuc--CA---------UGCCGCCauc -5'
19033 5' -59 NC_004684.1 + 20849 0.67 0.565613
Target:  5'- uCCCGGacaacgcguuugUCACCGAGGgcaaggaccgUGCGGCGcugaucgcugaGUGGg -3'
miRNA:   3'- cGGGCC------------AGUGGCUCC----------AUGCCGC-----------CAUC- -5'
19033 5' -59 NC_004684.1 + 52225 0.67 0.565613
Target:  5'- cCCCGGcgUCgaucagGCCGuGGUgccacaGCGGCGGUAc -3'
miRNA:   3'- cGGGCC--AG------UGGCuCCA------UGCCGCCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.