miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19034 3' -58.7 NC_004684.1 + 60972 0.66 0.603858
Target:  5'- uGGCuGGUGgcGUCgGCC-UCGGUGGUGAu -3'
miRNA:   3'- -CCG-CCACa-CAG-CGGuGGCCGCUACUu -5'
19034 3' -58.7 NC_004684.1 + 60593 0.66 0.603858
Target:  5'- cGGCGucguaGUGgccGUCGUccagugCACCGGCGAUGc- -3'
miRNA:   3'- -CCGC-----CACa--CAGCG------GUGGCCGCUACuu -5'
19034 3' -58.7 NC_004684.1 + 42682 0.66 0.593267
Target:  5'- cGGCGGUGgccaaccaGUUcaacgaucugGUCACCGGCG-UGAc -3'
miRNA:   3'- -CCGCCACa-------CAG----------CGGUGGCCGCuACUu -5'
19034 3' -58.7 NC_004684.1 + 40775 0.66 0.582706
Target:  5'- -aCGGUGUcGUuggcgaugacgcCGCCGCCGGUGgcGAAc -3'
miRNA:   3'- ccGCCACA-CA------------GCGGUGGCCGCuaCUU- -5'
19034 3' -58.7 NC_004684.1 + 59452 0.66 0.582706
Target:  5'- -cCGGUGUG-CGCCGgucggCGGCGAUGu- -3'
miRNA:   3'- ccGCCACACaGCGGUg----GCCGCUACuu -5'
19034 3' -58.7 NC_004684.1 + 7928 0.66 0.571134
Target:  5'- aGGUGGUGgacaUCGCCgccgACCGGCGcacaccgGUGGg -3'
miRNA:   3'- -CCGCCACac--AGCGG----UGGCCGC-------UACUu -5'
19034 3' -58.7 NC_004684.1 + 29308 0.66 0.565892
Target:  5'- cGGCGGUGguuuguacccGUCGCCGuugagcuucuuggccUCGGgGGUGGu -3'
miRNA:   3'- -CCGCCACa---------CAGCGGU---------------GGCCgCUACUu -5'
19034 3' -58.7 NC_004684.1 + 28440 0.66 0.561707
Target:  5'- uGCGGUGc-UUGgUGCCGGUGAUGGAg -3'
miRNA:   3'- cCGCCACacAGCgGUGGCCGCUACUU- -5'
19034 3' -58.7 NC_004684.1 + 52256 0.66 0.551283
Target:  5'- cGGCGGUacGUCGaaGCUGGCGuuGUGGAa -3'
miRNA:   3'- -CCGCCAcaCAGCggUGGCCGC--UACUU- -5'
19034 3' -58.7 NC_004684.1 + 66659 0.66 0.551283
Target:  5'- cGGCGGcGgcccgGUCACCGGCGGUGc- -3'
miRNA:   3'- -CCGCCaCacag-CGGUGGCCGCUACuu -5'
19034 3' -58.7 NC_004684.1 + 41879 0.67 0.545057
Target:  5'- cGGCGGUcgagaacagccgcucGccgGUCGCCuggccCUGGUGAUGAGc -3'
miRNA:   3'- -CCGCCA---------------Ca--CAGCGGu----GGCCGCUACUU- -5'
19034 3' -58.7 NC_004684.1 + 42222 0.67 0.540919
Target:  5'- cGUGGccgccgGUGUCGgCACCGGCGc-GAAg -3'
miRNA:   3'- cCGCCa-----CACAGCgGUGGCCGCuaCUU- -5'
19034 3' -58.7 NC_004684.1 + 63176 0.67 0.540919
Target:  5'- aGGCGcaugcaGUCGUgGCUGGCGGUGAu -3'
miRNA:   3'- -CCGCcaca--CAGCGgUGGCCGCUACUu -5'
19034 3' -58.7 NC_004684.1 + 49099 0.67 0.540919
Target:  5'- cGGCaGGUGccacagGUCGCCGUCGGCGucggccUGGAa -3'
miRNA:   3'- -CCG-CCACa-----CAGCGGUGGCCGCu-----ACUU- -5'
19034 3' -58.7 NC_004684.1 + 44736 0.67 0.534732
Target:  5'- uGCGGccuucuccaggucuuUGggGUCGCCGCUGGCGgcGGc -3'
miRNA:   3'- cCGCC---------------ACa-CAGCGGUGGCCGCuaCUu -5'
19034 3' -58.7 NC_004684.1 + 66634 0.67 0.530622
Target:  5'- cGGCGGUGUccaGgagCGCCGCCagGGCGucgGUGu- -3'
miRNA:   3'- -CCGCCACA---Ca--GCGGUGG--CCGC---UACuu -5'
19034 3' -58.7 NC_004684.1 + 43524 0.67 0.520396
Target:  5'- gGGCGGgagcgGUGgcugCGCCACCuccgaaCGGUGAGg -3'
miRNA:   3'- -CCGCCa----CACa---GCGGUGGcc----GCUACUU- -5'
19034 3' -58.7 NC_004684.1 + 26428 0.67 0.520396
Target:  5'- aGCGGgGU-UCGCCGCCGGUGGc--- -3'
miRNA:   3'- cCGCCaCAcAGCGGUGGCCGCUacuu -5'
19034 3' -58.7 NC_004684.1 + 5053 0.67 0.520396
Target:  5'- uGGCGcgcgcuGUGcugGagGCCuCCGGCGAUGAGa -3'
miRNA:   3'- -CCGC------CACa--CagCGGuGGCCGCUACUU- -5'
19034 3' -58.7 NC_004684.1 + 64083 0.67 0.500184
Target:  5'- aGCGGc---UCGCCACCGGaGAUGAc -3'
miRNA:   3'- cCGCCacacAGCGGUGGCCgCUACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.