miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19034 5' -50.5 NC_004684.1 + 30989 0.65 0.961652
Target:  5'- cGUUGAgacgcugauggcgCAGCUGGgCCUGa--CGCCg -3'
miRNA:   3'- aCAACUa------------GUCGGCCaGGACaaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 14050 0.66 0.959318
Target:  5'- ------cCGGCCGGUaCCUGguuccgCGCCa -3'
miRNA:   3'- acaacuaGUCGGCCA-GGACaaa---GUGG- -5'
19034 5' -50.5 NC_004684.1 + 59870 0.66 0.955213
Target:  5'- aGUUGAUCAGUgGGUCacgcg-CGCg -3'
miRNA:   3'- aCAACUAGUCGgCCAGgacaaaGUGg -5'
19034 5' -50.5 NC_004684.1 + 57471 0.66 0.950836
Target:  5'- ------aCuGCCGGUCCUGcc-CACCg -3'
miRNA:   3'- acaacuaGuCGGCCAGGACaaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 38621 0.66 0.946182
Target:  5'- gUGUcGAUCAGCCG-UCUgggcgGUaucucccgcaUUCACCg -3'
miRNA:   3'- -ACAaCUAGUCGGCcAGGa----CA----------AAGUGG- -5'
19034 5' -50.5 NC_004684.1 + 56293 0.66 0.946182
Target:  5'- ----cAUCAGcCCGGcCCUGgcgCGCCg -3'
miRNA:   3'- acaacUAGUC-GGCCaGGACaaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 36965 0.66 0.941248
Target:  5'- ---cGA-CGGCCaGUUCgGUUUCGCCg -3'
miRNA:   3'- acaaCUaGUCGGcCAGGaCAAAGUGG- -5'
19034 5' -50.5 NC_004684.1 + 53120 0.66 0.941248
Target:  5'- gUGUUGGUCAGCgUGaagCUGUUgUCGCCg -3'
miRNA:   3'- -ACAACUAGUCG-GCcagGACAA-AGUGG- -5'
19034 5' -50.5 NC_004684.1 + 40115 0.66 0.941248
Target:  5'- gUGcUGAUCAGcCCGGUCaCcGUgccgaaCGCCg -3'
miRNA:   3'- -ACaACUAGUC-GGCCAG-GaCAaa----GUGG- -5'
19034 5' -50.5 NC_004684.1 + 37556 0.67 0.924734
Target:  5'- cGUUGGggugCAGCUGGguaUCCUcUggCACCa -3'
miRNA:   3'- aCAACUa---GUCGGCC---AGGAcAaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 62243 0.67 0.918656
Target:  5'- gGUaGcgCGGCUGGUCCUGcc-CGCUc -3'
miRNA:   3'- aCAaCuaGUCGGCCAGGACaaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 42711 0.68 0.905644
Target:  5'- --aUGGUCGGCaGG-CCUGgaaccUCACCg -3'
miRNA:   3'- acaACUAGUCGgCCaGGACaa---AGUGG- -5'
19034 5' -50.5 NC_004684.1 + 21835 0.68 0.905644
Target:  5'- ---cGAUCAGCCGGgcaUCCaUGgc-CGCCc -3'
miRNA:   3'- acaaCUAGUCGGCC---AGG-ACaaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 18586 0.68 0.884026
Target:  5'- cUGUUGGagaacggCGGCCuGUCCUGcaUCAUCg -3'
miRNA:   3'- -ACAACUa------GUCGGcCAGGACaaAGUGG- -5'
19034 5' -50.5 NC_004684.1 + 34179 0.69 0.868267
Target:  5'- aGUUGggCcGCCGGg-CUGUccgUCGCCa -3'
miRNA:   3'- aCAACuaGuCGGCCagGACAa--AGUGG- -5'
19034 5' -50.5 NC_004684.1 + 61346 0.7 0.815147
Target:  5'- gGUUGGUCAGCUGGgCCgcgaggCGCUg -3'
miRNA:   3'- aCAACUAGUCGGCCaGGacaaa-GUGG- -5'
19034 5' -50.5 NC_004684.1 + 27362 0.7 0.815147
Target:  5'- gGggGAUCGGcCCGGUCUg----CGCCg -3'
miRNA:   3'- aCaaCUAGUC-GGCCAGGacaaaGUGG- -5'
19034 5' -50.5 NC_004684.1 + 44099 0.71 0.77562
Target:  5'- aGUUGGUCAGCUucUCCUGgcccucgUCGCUg -3'
miRNA:   3'- aCAACUAGUCGGccAGGACaa-----AGUGG- -5'
19034 5' -50.5 NC_004684.1 + 9262 0.75 0.545206
Target:  5'- aUGUcGAUCAGCCGGUCgCguugUUCGCg -3'
miRNA:   3'- -ACAaCUAGUCGGCCAG-Gaca-AAGUGg -5'
19034 5' -50.5 NC_004684.1 + 35704 1.12 0.002403
Target:  5'- aUGUUGAUCAGCCGGUCCUGUUUCACCc -3'
miRNA:   3'- -ACAACUAGUCGGCCAGGACAAAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.