miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19035 3' -58.6 NC_004684.1 + 67158 0.66 0.603026
Target:  5'- cGGUGUuaccGCGCCGGgGguucuuguagUAGGUgcuCAGCg -3'
miRNA:   3'- aCCACA----CGUGGCCgCa---------GUCCGu--GUCG- -5'
19035 3' -58.6 NC_004684.1 + 27844 0.66 0.603026
Target:  5'- cGGUGcUGU-CCGGCGaggaUUAGGCcugcacgcACGGCg -3'
miRNA:   3'- aCCAC-ACGuGGCCGC----AGUCCG--------UGUCG- -5'
19035 3' -58.6 NC_004684.1 + 18618 0.66 0.603026
Target:  5'- cGGcccGC-CCGGCGUC-GGCAagucCAGCg -3'
miRNA:   3'- aCCacaCGuGGCCGCAGuCCGU----GUCG- -5'
19035 3' -58.6 NC_004684.1 + 30264 0.66 0.603026
Target:  5'- cGGcgcaGUGCGCUGGCGgCAcGC-CAGCc -3'
miRNA:   3'- aCCa---CACGUGGCCGCaGUcCGuGUCG- -5'
19035 3' -58.6 NC_004684.1 + 49488 0.66 0.603026
Target:  5'- cGGUccagauGUGCAgCGGCGcgUCGGGgguguaGCGGCc -3'
miRNA:   3'- aCCA------CACGUgGCCGC--AGUCCg-----UGUCG- -5'
19035 3' -58.6 NC_004684.1 + 60127 0.66 0.603026
Target:  5'- aGGUGUG-ACCGG-GUCGcGCACcuuGCu -3'
miRNA:   3'- aCCACACgUGGCCgCAGUcCGUGu--CG- -5'
19035 3' -58.6 NC_004684.1 + 19545 0.66 0.600897
Target:  5'- cGG-GUGCGCCgGGCGgugccaggucucCGGGCcUGGCg -3'
miRNA:   3'- aCCaCACGUGG-CCGCa-----------GUCCGuGUCG- -5'
19035 3' -58.6 NC_004684.1 + 5524 0.66 0.592392
Target:  5'- cUGGUGgcGCAgCUGGUGgaugAGGCGCAGa -3'
miRNA:   3'- -ACCACa-CGU-GGCCGCag--UCCGUGUCg -5'
19035 3' -58.6 NC_004684.1 + 28059 0.66 0.592392
Target:  5'- cGGUGgucgGCcCCGGCGguguggcCGGGcCGCcGCg -3'
miRNA:   3'- aCCACa---CGuGGCCGCa------GUCC-GUGuCG- -5'
19035 3' -58.6 NC_004684.1 + 39560 0.66 0.592392
Target:  5'- cGGacaGCACCGGaCGgaUCAGGCcgcccucaACAGCu -3'
miRNA:   3'- aCCacaCGUGGCC-GC--AGUCCG--------UGUCG- -5'
19035 3' -58.6 NC_004684.1 + 48623 0.66 0.58179
Target:  5'- -----cGUACCGGCcUCGGGUACGGg -3'
miRNA:   3'- accacaCGUGGCCGcAGUCCGUGUCg -5'
19035 3' -58.6 NC_004684.1 + 54605 0.66 0.58179
Target:  5'- cGGggGUGCcguuguccucGuuGGcCG-CAGGCGCAGCc -3'
miRNA:   3'- aCCa-CACG----------UggCC-GCaGUCCGUGUCG- -5'
19035 3' -58.6 NC_004684.1 + 63734 0.66 0.58179
Target:  5'- gGGUGUGCGCauCGGUGcCGaccGGCAUgacccagguGGCg -3'
miRNA:   3'- aCCACACGUG--GCCGCaGU---CCGUG---------UCG- -5'
19035 3' -58.6 NC_004684.1 + 65098 0.66 0.58179
Target:  5'- cGGUcaGCACC-GCGUCGuGGCccaggcugGCGGCa -3'
miRNA:   3'- aCCAcaCGUGGcCGCAGU-CCG--------UGUCG- -5'
19035 3' -58.6 NC_004684.1 + 58778 0.66 0.58179
Target:  5'- cGGUgccgGUGCACCGGgcuUGUUcgAGGCcacCGGCg -3'
miRNA:   3'- aCCA----CACGUGGCC---GCAG--UCCGu--GUCG- -5'
19035 3' -58.6 NC_004684.1 + 8819 0.66 0.58179
Target:  5'- aGGc--GCugCGGCGcaaGGGCuACAGCa -3'
miRNA:   3'- aCCacaCGugGCCGCag-UCCG-UGUCG- -5'
19035 3' -58.6 NC_004684.1 + 45626 0.66 0.58179
Target:  5'- cGGUcu-UGCCGGgGaaCAGGCGCAGCg -3'
miRNA:   3'- aCCAcacGUGGCCgCa-GUCCGUGUCG- -5'
19035 3' -58.6 NC_004684.1 + 10648 0.66 0.571227
Target:  5'- gUGGUcugGUGCCGGUucccGUgCuGGCGCGGCa -3'
miRNA:   3'- -ACCAca-CGUGGCCG----CA-GuCCGUGUCG- -5'
19035 3' -58.6 NC_004684.1 + 26530 0.66 0.571227
Target:  5'- -cGUGUcGCGCCugGGCgGUCAGGC-CGGg -3'
miRNA:   3'- acCACA-CGUGG--CCG-CAGUCCGuGUCg -5'
19035 3' -58.6 NC_004684.1 + 48379 0.66 0.571227
Target:  5'- cGGUGUggugcacgaucaGCAccCCGGCGUU-GGUgugGCGGCg -3'
miRNA:   3'- aCCACA------------CGU--GGCCGCAGuCCG---UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.