miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19035 5' -55.9 NC_004684.1 + 32441 0.66 0.768194
Target:  5'- gCGAUGCACCUCgacUCGaacuCGGCgGgCAa -3'
miRNA:   3'- gGUUACGUGGAGa--AGCg---GCUGgCgGU- -5'
19035 5' -55.9 NC_004684.1 + 44193 0.66 0.768194
Target:  5'- gCCA--GCACCUCgcgguacUUGUCGACCcaggGCCGg -3'
miRNA:   3'- -GGUuaCGUGGAGa------AGCGGCUGG----CGGU- -5'
19035 5' -55.9 NC_004684.1 + 51174 0.66 0.768194
Target:  5'- gCCGAUGCGCCgg---GCCaugGACCGCg- -3'
miRNA:   3'- -GGUUACGUGGagaagCGG---CUGGCGgu -5'
19035 5' -55.9 NC_004684.1 + 30483 0.66 0.762214
Target:  5'- aCCGGUGCGaugccaccggccaguCCgagCUggUUGCCGACCacgGCCAc -3'
miRNA:   3'- -GGUUACGU---------------GGa--GA--AGCGGCUGG---CGGU- -5'
19035 5' -55.9 NC_004684.1 + 51016 0.66 0.758201
Target:  5'- gUCGAUGUGCCggg-UGUacuCGGCCGCCAg -3'
miRNA:   3'- -GGUUACGUGGagaaGCG---GCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 25801 0.66 0.758201
Target:  5'- gCCGAccUGCGCCaggaaaUGCCG-CCGCCGa -3'
miRNA:   3'- -GGUU--ACGUGGagaa--GCGGCuGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 13205 0.66 0.758201
Target:  5'- gCCGGuuUGCGCCUgCUgaucaUUGCCGAUaaagGCCAa -3'
miRNA:   3'- -GGUU--ACGUGGA-GA-----AGCGGCUGg---CGGU- -5'
19035 5' -55.9 NC_004684.1 + 45108 0.66 0.758201
Target:  5'- gCCGccGCGCgggcCUUgGCCG-CCGCCAg -3'
miRNA:   3'- -GGUuaCGUGga--GAAgCGGCuGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 45032 0.66 0.758201
Target:  5'- gCCAGcGCgACCgc--CGCCGccGCCGCCAc -3'
miRNA:   3'- -GGUUaCG-UGGagaaGCGGC--UGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 2286 0.66 0.758201
Target:  5'- gCCAGccUGgGCCacgacgCggUGCUGACCGCCGu -3'
miRNA:   3'- -GGUU--ACgUGGa-----GaaGCGGCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 9560 0.66 0.748085
Target:  5'- gCCGGUGCGCCgCgaacacgUgGCCGACCugauCCGu -3'
miRNA:   3'- -GGUUACGUGGaGa------AgCGGCUGGc---GGU- -5'
19035 5' -55.9 NC_004684.1 + 57817 0.66 0.748085
Target:  5'- aCCAcgGCcugguCCcggCggUGCUGGCCGCCGg -3'
miRNA:   3'- -GGUuaCGu----GGa--GaaGCGGCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 40180 0.66 0.748085
Target:  5'- cCCGAUGagaaGgCUCUggaUCGCaCcGCCGCCAa -3'
miRNA:   3'- -GGUUACg---UgGAGA---AGCG-GcUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 59342 0.66 0.748085
Target:  5'- ----cGCACC-CUgcuggCGCUggagGACCGCCAg -3'
miRNA:   3'- gguuaCGUGGaGAa----GCGG----CUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 66848 0.66 0.737855
Target:  5'- cCCGGUGC-CCUCcaggccUUCGCCGGguCCagGCCu -3'
miRNA:   3'- -GGUUACGuGGAG------AAGCGGCU--GG--CGGu -5'
19035 5' -55.9 NC_004684.1 + 25376 0.66 0.737855
Target:  5'- cCCGGUcaGCGCCUa--CGCCG-CCGCgCAc -3'
miRNA:   3'- -GGUUA--CGUGGAgaaGCGGCuGGCG-GU- -5'
19035 5' -55.9 NC_004684.1 + 39208 0.66 0.737855
Target:  5'- uCCAcGUGCGCCUCgcgcaggUUGCaCG-CCaGCCAu -3'
miRNA:   3'- -GGU-UACGUGGAGa------AGCG-GCuGG-CGGU- -5'
19035 5' -55.9 NC_004684.1 + 36718 0.66 0.736827
Target:  5'- gCCGGggGUuaccgcaucgACCUgUUCGCCGucccggcgcugacGCCGCCAg -3'
miRNA:   3'- -GGUUa-CG----------UGGAgAAGCGGC-------------UGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 7897 0.66 0.727524
Target:  5'- cCCGGUGCuCCguuggggcCGCUGGCCGCgCAg -3'
miRNA:   3'- -GGUUACGuGGagaa----GCGGCUGGCG-GU- -5'
19035 5' -55.9 NC_004684.1 + 52673 0.66 0.727524
Target:  5'- gCCA--GCACCUCUUUGacCCGGuuGgCCAg -3'
miRNA:   3'- -GGUuaCGUGGAGAAGC--GGCUggC-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.