miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19035 5' -55.9 NC_004684.1 + 35117 1.1 0.000936
Target:  5'- gCCAAUGCACCUCUUCGCCGACCGCCAa -3'
miRNA:   3'- -GGUUACGUGGAGAAGCGGCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 12918 0.78 0.162514
Target:  5'- gCCGGUGCGCCgucggccaaCUUCGCCG-CCGUCGg -3'
miRNA:   3'- -GGUUACGUGGa--------GAAGCGGCuGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 3408 0.77 0.190576
Target:  5'- aCCAAcgGCACC-CUggcacCGCUGGCCGCCAc -3'
miRNA:   3'- -GGUUa-CGUGGaGAa----GCGGCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 48976 0.75 0.26614
Target:  5'- gCCGGUGCGCC----CGCCgGGCCGCCGa -3'
miRNA:   3'- -GGUUACGUGGagaaGCGG-CUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 42616 0.74 0.286708
Target:  5'- aCCcg-GCACCUCcccCGCCG-CCGCCGg -3'
miRNA:   3'- -GGuuaCGUGGAGaa-GCGGCuGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 36498 0.74 0.293837
Target:  5'- gUCGGUGU-CUUCUUCGCCGAgCCGUCGu -3'
miRNA:   3'- -GGUUACGuGGAGAAGCGGCU-GGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 8620 0.74 0.308508
Target:  5'- cCCGGUGCACCggcacCGCCGAuccucggcacccCCGCCGu -3'
miRNA:   3'- -GGUUACGUGGagaa-GCGGCU------------GGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 47053 0.74 0.311508
Target:  5'- aCGGUGCACCgggCgaCGCCGaucucgauggccgccGCCGCCAu -3'
miRNA:   3'- gGUUACGUGGa--GaaGCGGC---------------UGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 1597 0.74 0.323731
Target:  5'- cCCGGUGCACggcaUCggUCGCCGugCGCg- -3'
miRNA:   3'- -GGUUACGUGg---AGa-AGCGGCugGCGgu -5'
19035 5' -55.9 NC_004684.1 + 48518 0.73 0.336307
Target:  5'- cCCGAUGC-CCUCgcggaugauguagUUGCCGACCuccuGCCAc -3'
miRNA:   3'- -GGUUACGuGGAGa------------AGCGGCUGG----CGGU- -5'
19035 5' -55.9 NC_004684.1 + 4783 0.73 0.339507
Target:  5'- gCCAGcaaGCGCCUCggcgcggUgGCCGACCGCa- -3'
miRNA:   3'- -GGUUa--CGUGGAGa------AgCGGCUGGCGgu -5'
19035 5' -55.9 NC_004684.1 + 56795 0.73 0.347601
Target:  5'- gCAGUugcGCACCUCgcgCGCCGaACCaGCCGg -3'
miRNA:   3'- gGUUA---CGUGGAGaa-GCGGC-UGG-CGGU- -5'
19035 5' -55.9 NC_004684.1 + 41325 0.73 0.3642
Target:  5'- gCUAcgGCACCgCgacCGCCGACgGCCGg -3'
miRNA:   3'- -GGUuaCGUGGaGaa-GCGGCUGgCGGU- -5'
19035 5' -55.9 NC_004684.1 + 26901 0.73 0.3642
Target:  5'- aCCAGgugcugGCGCaCUCggCGCaGACCGCCGa -3'
miRNA:   3'- -GGUUa-----CGUG-GAGaaGCGgCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 55318 0.73 0.3642
Target:  5'- gCCA--GCACCUCgucgCGCuCGGCgGCCAg -3'
miRNA:   3'- -GGUuaCGUGGAGaa--GCG-GCUGgCGGU- -5'
19035 5' -55.9 NC_004684.1 + 1575 0.72 0.372703
Target:  5'- -uGGUGCGCCUgUcugCGCUGAgCGCCAg -3'
miRNA:   3'- ggUUACGUGGAgAa--GCGGCUgGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 61221 0.72 0.38134
Target:  5'- cCCGGUGCcuACCgccgcaCGCUGGCCGCCGc -3'
miRNA:   3'- -GGUUACG--UGGagaa--GCGGCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 11611 0.72 0.390109
Target:  5'- aCGAcgGCACCgagCUggcCGUCGGCCGCCu -3'
miRNA:   3'- gGUUa-CGUGGa--GAa--GCGGCUGGCGGu -5'
19035 5' -55.9 NC_004684.1 + 16789 0.72 0.390109
Target:  5'- gCCGAUG-ACC----CGCCGACCGCCGa -3'
miRNA:   3'- -GGUUACgUGGagaaGCGGCUGGCGGU- -5'
19035 5' -55.9 NC_004684.1 + 21096 0.72 0.399009
Target:  5'- gCCAA-GCGCCgcaacgCGCuCGGCCGCCGc -3'
miRNA:   3'- -GGUUaCGUGGagaa--GCG-GCUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.