miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19036 3' -56.3 NC_004684.1 + 62970 0.66 0.737855
Target:  5'- uGGCGUgcucgGUGGUgcgcacgugGCCGGuGGCCGg-- -3'
miRNA:   3'- uCUGCAa----CGCCAa--------CGGCU-CCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 59024 0.66 0.737855
Target:  5'- uGGCGUUugaGGUcgaUGCCGAuGGCCGa-- -3'
miRNA:   3'- uCUGCAAcg-CCA---ACGGCU-CCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 25865 0.66 0.727524
Target:  5'- gAGAUGagcUGCGG-UGCCaGGGCCucGUAGc -3'
miRNA:   3'- -UCUGCa--ACGCCaACGGcUCCGG--CAUC- -5'
19036 3' -56.3 NC_004684.1 + 38136 0.66 0.727524
Target:  5'- cGGCGgucgGCGGUgaUGCCuugaauGGGGCCGc-- -3'
miRNA:   3'- uCUGCaa--CGCCA--ACGG------CUCCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 9555 0.66 0.717101
Target:  5'- cGGGCGgguaccgGCGGccagcaccGCCGggaccAGGCCGUGGu -3'
miRNA:   3'- -UCUGCaa-----CGCCaa------CGGC-----UCCGGCAUC- -5'
19036 3' -56.3 NC_004684.1 + 27264 0.66 0.717101
Target:  5'- cGAgGU--CGG-UGCCGAGGCCGc-- -3'
miRNA:   3'- uCUgCAacGCCaACGGCUCCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 476 0.66 0.717101
Target:  5'- cGAgGUUGUGGccGCCaAGGCCGc-- -3'
miRNA:   3'- uCUgCAACGCCaaCGGcUCCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 24774 0.66 0.696024
Target:  5'- cGGCGgcgGCGGgggaggUGCCG-GGUCGaAGg -3'
miRNA:   3'- uCUGCaa-CGCCa-----ACGGCuCCGGCaUC- -5'
19036 3' -56.3 NC_004684.1 + 46681 0.66 0.685392
Target:  5'- uGGCGUUGCGG-UGgCGGuGCgGUGGc -3'
miRNA:   3'- uCUGCAACGCCaACgGCUcCGgCAUC- -5'
19036 3' -56.3 NC_004684.1 + 42578 0.66 0.684326
Target:  5'- uGugGUguccUGCGcgauGUUGCCGAccgccuuGGCCGUAu -3'
miRNA:   3'- uCugCA----ACGC----CAACGGCU-------CCGGCAUc -5'
19036 3' -56.3 NC_004684.1 + 28059 0.67 0.674711
Target:  5'- cGGugGUcggccccgGCGGUgugGCCG-GGCCGc-- -3'
miRNA:   3'- -UCugCAa-------CGCCAa--CGGCuCCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 22702 0.67 0.674711
Target:  5'- cGGCGgcGCaGGacgugGCCaAGGCCGUGGc -3'
miRNA:   3'- uCUGCaaCG-CCaa---CGGcUCCGGCAUC- -5'
19036 3' -56.3 NC_004684.1 + 48960 0.67 0.653242
Target:  5'- cGGCGg-GCGGggugGCCGGGGCgGgcGc -3'
miRNA:   3'- uCUGCaaCGCCaa--CGGCUCCGgCauC- -5'
19036 3' -56.3 NC_004684.1 + 54195 0.67 0.653242
Target:  5'- cAGGCGcaaaccgGCGGccUGCuCGGGGCCG-AGg -3'
miRNA:   3'- -UCUGCaa-----CGCCa-ACG-GCUCCGGCaUC- -5'
19036 3' -56.3 NC_004684.1 + 41024 0.67 0.646784
Target:  5'- cGACGUUGcCGG-UGCCGuugcccgacggaauGGCCGa-- -3'
miRNA:   3'- uCUGCAAC-GCCaACGGCu-------------CCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 25713 0.67 0.631699
Target:  5'- -cGCGcUGgGuGUUGCCGAGGUCGg-- -3'
miRNA:   3'- ucUGCaACgC-CAACGGCUCCGGCauc -5'
19036 3' -56.3 NC_004684.1 + 60431 0.67 0.631699
Target:  5'- uGGCGUUGCcGUUGCCGGuGGCg---- -3'
miRNA:   3'- uCUGCAACGcCAACGGCU-CCGgcauc -5'
19036 3' -56.3 NC_004684.1 + 1794 0.67 0.631699
Target:  5'- aGGACGccgccgUGCGGcucaUGaCCGAGGCCaUGGc -3'
miRNA:   3'- -UCUGCa-----ACGCCa---AC-GGCUCCGGcAUC- -5'
19036 3' -56.3 NC_004684.1 + 66292 0.67 0.630621
Target:  5'- -cACGUUGCGGgUGcCCGAcggcagcGGCgCGUAGu -3'
miRNA:   3'- ucUGCAACGCCaAC-GGCU-------CCG-GCAUC- -5'
19036 3' -56.3 NC_004684.1 + 42945 0.68 0.588688
Target:  5'- cGGCGcUUGUGGcUGCUGuGGuuGUGGc -3'
miRNA:   3'- uCUGC-AACGCCaACGGCuCCggCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.