miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19036 5' -60 NC_004684.1 + 30898 0.66 0.512847
Target:  5'- gCGuCCcGGCCUUGCCGAugucgaacCCGGUGCc-- -3'
miRNA:   3'- -GC-GGuCCGGAACGGUU--------GGCCGUGcua -5'
19036 5' -60 NC_004684.1 + 273 0.66 0.512847
Target:  5'- gGCgAGGCCUucgUGCaCAcCUGGCACa-- -3'
miRNA:   3'- gCGgUCCGGA---ACG-GUuGGCCGUGcua -5'
19036 5' -60 NC_004684.1 + 7903 0.66 0.512847
Target:  5'- uGCCcugguGGCCgccaGCCAGCCGGUggaGAa -3'
miRNA:   3'- gCGGu----CCGGaa--CGGUUGGCCGug-CUa -5'
19036 5' -60 NC_004684.1 + 40225 0.66 0.512847
Target:  5'- gGCCAGGUCgccGCCGuaGCUGGUgauCGAa -3'
miRNA:   3'- gCGGUCCGGaa-CGGU--UGGCCGu--GCUa -5'
19036 5' -60 NC_004684.1 + 52877 0.66 0.512847
Target:  5'- gGCCAGGgucaCCgucacgUGCCAccggcgACCGGCGUGGUa -3'
miRNA:   3'- gCGGUCC----GGa-----ACGGU------UGGCCGUGCUA- -5'
19036 5' -60 NC_004684.1 + 15264 0.66 0.512847
Target:  5'- gGCCuGGCCaacacccuggugGCCAccagcccgacguuugGCUGGCGCGAc -3'
miRNA:   3'- gCGGuCCGGaa----------CGGU---------------UGGCCGUGCUa -5'
19036 5' -60 NC_004684.1 + 42811 0.66 0.512847
Target:  5'- uCGUCAGGacgUGCuCGcCCGGCAUGAg -3'
miRNA:   3'- -GCGGUCCggaACG-GUuGGCCGUGCUa -5'
19036 5' -60 NC_004684.1 + 43558 0.66 0.512847
Target:  5'- gGCCuuGGCCUUGuCCAGCCgcuccuugguGGaCugGAa -3'
miRNA:   3'- gCGGu-CCGGAAC-GGUUGG----------CC-GugCUa -5'
19036 5' -60 NC_004684.1 + 10729 0.66 0.502733
Target:  5'- aGCCAGGCCgacgagaUCGAgCGGCGCa-- -3'
miRNA:   3'- gCGGUCCGGaac----GGUUgGCCGUGcua -5'
19036 5' -60 NC_004684.1 + 22991 0.66 0.502733
Target:  5'- cCGCUGaucaacGGCCUggGCCGACUGGCcgccgucggcaGCGAUu -3'
miRNA:   3'- -GCGGU------CCGGAa-CGGUUGGCCG-----------UGCUA- -5'
19036 5' -60 NC_004684.1 + 27630 0.66 0.502733
Target:  5'- gGCCAGgacGCCaUGCCAcCCGGUcucaugaccACGGUg -3'
miRNA:   3'- gCGGUC---CGGaACGGUuGGCCG---------UGCUA- -5'
19036 5' -60 NC_004684.1 + 7922 0.66 0.502733
Target:  5'- cCGCgCAGGUgguggacauCgccGCCGACCGGCGCa-- -3'
miRNA:   3'- -GCG-GUCCG---------Gaa-CGGUUGGCCGUGcua -5'
19036 5' -60 NC_004684.1 + 26958 0.66 0.499716
Target:  5'- uGCCaAGGCggugGCCAacgccgccauccagGCCGGUGCGAg -3'
miRNA:   3'- gCGG-UCCGgaa-CGGU--------------UGGCCGUGCUa -5'
19036 5' -60 NC_004684.1 + 4432 0.66 0.499716
Target:  5'- aCGCgCGGGCCUgcugGCgCAGCUGgaggccgcacgugcGCGCGAg -3'
miRNA:   3'- -GCG-GUCCGGAa---CG-GUUGGC--------------CGUGCUa -5'
19036 5' -60 NC_004684.1 + 31119 0.66 0.492707
Target:  5'- gCGCUggAGGaCCUUGgCGACCuGGCGCa-- -3'
miRNA:   3'- -GCGG--UCC-GGAACgGUUGG-CCGUGcua -5'
19036 5' -60 NC_004684.1 + 40002 0.66 0.492707
Target:  5'- gCGUCGGGUUgaGCaCGcgcuCCGGCGCGAUg -3'
miRNA:   3'- -GCGGUCCGGaaCG-GUu---GGCCGUGCUA- -5'
19036 5' -60 NC_004684.1 + 53347 0.66 0.492707
Target:  5'- aCGCCAccGCCUUGCUggUCGGguCGc- -3'
miRNA:   3'- -GCGGUc-CGGAACGGuuGGCCguGCua -5'
19036 5' -60 NC_004684.1 + 20035 0.66 0.489717
Target:  5'- cCGCCGgguccuaccguGGCCUggugGCCAugcucgacgcccacACCGGCgacACGGUg -3'
miRNA:   3'- -GCGGU-----------CCGGAa---CGGU--------------UGGCCG---UGCUA- -5'
19036 5' -60 NC_004684.1 + 15100 0.66 0.482773
Target:  5'- cCGCCcuggAGGCCgaccUUGCCGucACCGGgACGc- -3'
miRNA:   3'- -GCGG----UCCGG----AACGGU--UGGCCgUGCua -5'
19036 5' -60 NC_004684.1 + 61713 0.66 0.482773
Target:  5'- gGCCGGGCCccgGCCAccuCCGacCACGGc -3'
miRNA:   3'- gCGGUCCGGaa-CGGUu--GGCc-GUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.