miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19038 3' -55.7 NC_004684.1 + 58656 0.66 0.759586
Target:  5'- aUCCGUGGCuuGCUcaUGGUGGCCauguUCCc -3'
miRNA:   3'- cAGGUAUUGc-CGGuaACCGCCGG----AGG- -5'
19038 3' -55.7 NC_004684.1 + 60230 0.66 0.759586
Target:  5'- -cCCGUGcGCGGCUGUucggUGGCGGUCa-- -3'
miRNA:   3'- caGGUAU-UGCCGGUA----ACCGCCGGagg -5'
19038 3' -55.7 NC_004684.1 + 60074 0.66 0.759586
Target:  5'- -cCCG--GCGGCCcgUGcG-GGCCUUCa -3'
miRNA:   3'- caGGUauUGCCGGuaAC-CgCCGGAGG- -5'
19038 3' -55.7 NC_004684.1 + 24480 0.66 0.759586
Target:  5'- -aCC-UGGCGGCguUcgucgucaggUGGCGGUCUCg -3'
miRNA:   3'- caGGuAUUGCCGguA----------ACCGCCGGAGg -5'
19038 3' -55.7 NC_004684.1 + 23672 0.66 0.756545
Target:  5'- -aCCG--ACGGCCuggucGGCccggaccagagcguGGCCUCCa -3'
miRNA:   3'- caGGUauUGCCGGuaa--CCG--------------CCGGAGG- -5'
19038 3' -55.7 NC_004684.1 + 40932 0.66 0.749406
Target:  5'- -gCUGUcGCGGCCA--GGCGuGCCgCCg -3'
miRNA:   3'- caGGUAuUGCCGGUaaCCGC-CGGaGG- -5'
19038 3' -55.7 NC_004684.1 + 30253 0.66 0.749406
Target:  5'- -cCCAgaacUGGCGGCgCAgugcgcUGGCGGCacgCCa -3'
miRNA:   3'- caGGU----AUUGCCG-GUa-----ACCGCCGga-GG- -5'
19038 3' -55.7 NC_004684.1 + 39018 0.66 0.749406
Target:  5'- cGUCgGUAucgaccucuACGGCUc--GGCGGUgUCCa -3'
miRNA:   3'- -CAGgUAU---------UGCCGGuaaCCGCCGgAGG- -5'
19038 3' -55.7 NC_004684.1 + 38005 0.66 0.748382
Target:  5'- uGUCCu---CGGCCAUcUGGUGccacaacGCCUCa -3'
miRNA:   3'- -CAGGuauuGCCGGUA-ACCGC-------CGGAGg -5'
19038 3' -55.7 NC_004684.1 + 48027 0.66 0.73911
Target:  5'- uGUCCu---CGGCCAUguugcgccgcUGGaucaGcGCCUCCc -3'
miRNA:   3'- -CAGGuauuGCCGGUA----------ACCg---C-CGGAGG- -5'
19038 3' -55.7 NC_004684.1 + 2682 0.66 0.73911
Target:  5'- -cCCgAUGGaGGCCc-UGGCGGCCgCCa -3'
miRNA:   3'- caGG-UAUUgCCGGuaACCGCCGGaGG- -5'
19038 3' -55.7 NC_004684.1 + 25245 0.66 0.72871
Target:  5'- -cCCAUA--GGCCGUgcgUGGUGGCgUCg -3'
miRNA:   3'- caGGUAUugCCGGUA---ACCGCCGgAGg -5'
19038 3' -55.7 NC_004684.1 + 48235 0.66 0.718215
Target:  5'- uGUCCAgcucGAUGGCCuugccgGGgaGGCgUCCg -3'
miRNA:   3'- -CAGGUa---UUGCCGGuaa---CCg-CCGgAGG- -5'
19038 3' -55.7 NC_004684.1 + 52854 0.66 0.718215
Target:  5'- aGUCCGUAGCGGUCGgccaguuaGGCcagGGUCaCCg -3'
miRNA:   3'- -CAGGUAUUGCCGGUaa------CCG---CCGGaGG- -5'
19038 3' -55.7 NC_004684.1 + 49177 0.66 0.718215
Target:  5'- aGUCUcgGcgGCGGCggCGgcGGCGGCCUgCu -3'
miRNA:   3'- -CAGGuaU--UGCCG--GUaaCCGCCGGAgG- -5'
19038 3' -55.7 NC_004684.1 + 15673 0.66 0.718215
Target:  5'- cUCCAacgUcgUGGCCAgcGGCGGCa-CCg -3'
miRNA:   3'- cAGGU---AuuGCCGGUaaCCGCCGgaGG- -5'
19038 3' -55.7 NC_004684.1 + 63973 0.66 0.717161
Target:  5'- cGUCCuu-GCGGuagaccuCCAUcaccuuggcGGCGGUCUCCa -3'
miRNA:   3'- -CAGGuauUGCC-------GGUAa--------CCGCCGGAGG- -5'
19038 3' -55.7 NC_004684.1 + 60105 0.66 0.71505
Target:  5'- gGUgCAguGCGGCgAUgaacuggucucgccUGGCGGCCUgCu -3'
miRNA:   3'- -CAgGUauUGCCGgUA--------------ACCGCCGGAgG- -5'
19038 3' -55.7 NC_004684.1 + 44745 0.66 0.707637
Target:  5'- cUCCAggucuuuGgGGUCGccgcuggcGGCGGCCUCCc -3'
miRNA:   3'- cAGGUau-----UgCCGGUaa------CCGCCGGAGG- -5'
19038 3' -55.7 NC_004684.1 + 42777 0.66 0.707637
Target:  5'- -cCCGguuugAGCGGCCu---GCcgGGCCUCCa -3'
miRNA:   3'- caGGUa----UUGCCGGuaacCG--CCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.