miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19038 5' -56.6 NC_004684.1 + 24502 0.66 0.743558
Target:  5'- gUGGCGGucucgGUGCCAGA-GGCCGGGc- -3'
miRNA:   3'- uGCUGCUg----CACGGUCUgCUGGCCUag -5'
19038 5' -56.6 NC_004684.1 + 60696 0.66 0.743558
Target:  5'- cGCGcCGACGgugGCCAGGuCGACCu---- -3'
miRNA:   3'- -UGCuGCUGCa--CGGUCU-GCUGGccuag -5'
19038 5' -56.6 NC_004684.1 + 32300 0.66 0.743557
Target:  5'- uCGGCGcUGUGCCuGACG-CCGGu-- -3'
miRNA:   3'- uGCUGCuGCACGGuCUGCuGGCCuag -5'
19038 5' -56.6 NC_004684.1 + 41702 0.66 0.743557
Target:  5'- gGCGACGGCGUGCgguucaagGGACGcgacuucauCCaGAUCa -3'
miRNA:   3'- -UGCUGCUGCACGg-------UCUGCu--------GGcCUAG- -5'
19038 5' -56.6 NC_004684.1 + 5859 0.66 0.743557
Target:  5'- gGCGuGCGACuGgcagGCCGGGCagcaccagccuGACCGGGUg -3'
miRNA:   3'- -UGC-UGCUG-Ca---CGGUCUG-----------CUGGCCUAg -5'
19038 5' -56.6 NC_004684.1 + 16015 0.66 0.742545
Target:  5'- -gGACGACG-GCCaaggccucaccucGGugGACUGGGc- -3'
miRNA:   3'- ugCUGCUGCaCGG-------------UCugCUGGCCUag -5'
19038 5' -56.6 NC_004684.1 + 21383 0.66 0.73339
Target:  5'- -gGACGACGUGCgCAccgUGGCCGGugacuUCa -3'
miRNA:   3'- ugCUGCUGCACG-GUcu-GCUGGCCu----AG- -5'
19038 5' -56.6 NC_004684.1 + 33763 0.66 0.73339
Target:  5'- cUGACGAgGUaGCCGcccGACGAuCCGGcgCu -3'
miRNA:   3'- uGCUGCUgCA-CGGU---CUGCU-GGCCuaG- -5'
19038 5' -56.6 NC_004684.1 + 46070 0.66 0.73339
Target:  5'- uGCGGCGGuCGcGCCGGACcACCGccUCg -3'
miRNA:   3'- -UGCUGCU-GCaCGGUCUGcUGGCcuAG- -5'
19038 5' -56.6 NC_004684.1 + 10070 0.66 0.73339
Target:  5'- gUGugGccuACG-GCCAGuCGACCGGGc- -3'
miRNA:   3'- uGCugC---UGCaCGGUCuGCUGGCCUag -5'
19038 5' -56.6 NC_004684.1 + 66353 0.66 0.733389
Target:  5'- -gGGCgGGCG-GCCAgGGCGACgCGGGUg -3'
miRNA:   3'- ugCUG-CUGCaCGGU-CUGCUG-GCCUAg -5'
19038 5' -56.6 NC_004684.1 + 32074 0.66 0.73032
Target:  5'- gGCGACGcaccGCGUcugggugagcguugGCCAGGCGguggaguccacACCGGAg- -3'
miRNA:   3'- -UGCUGC----UGCA--------------CGGUCUGC-----------UGGCCUag -5'
19038 5' -56.6 NC_004684.1 + 62904 0.66 0.723126
Target:  5'- uGCcACGGCGgGCCAGGCccuGGCCGGu-- -3'
miRNA:   3'- -UGcUGCUGCaCGGUCUG---CUGGCCuag -5'
19038 5' -56.6 NC_004684.1 + 43280 0.66 0.712779
Target:  5'- uGCGuCGGCGUGCCGGgcuGCGGCaccuugaaguuCGGGa- -3'
miRNA:   3'- -UGCuGCUGCACGGUC---UGCUG-----------GCCUag -5'
19038 5' -56.6 NC_004684.1 + 24773 0.66 0.712779
Target:  5'- cCGGCGGCG-GCgggGGAgGuGCCGGGUCg -3'
miRNA:   3'- uGCUGCUGCaCGg--UCUgC-UGGCCUAG- -5'
19038 5' -56.6 NC_004684.1 + 9018 0.66 0.712779
Target:  5'- cGCGGUGcCGUGCgGGGCGgcaACCGGcgCg -3'
miRNA:   3'- -UGCUGCuGCACGgUCUGC---UGGCCuaG- -5'
19038 5' -56.6 NC_004684.1 + 54298 0.66 0.712779
Target:  5'- -gGGCGGCGUGCaccgcGCGAaCCGGggCg -3'
miRNA:   3'- ugCUGCUGCACGguc--UGCU-GGCCuaG- -5'
19038 5' -56.6 NC_004684.1 + 55861 0.66 0.712778
Target:  5'- uGCGACGuCGacGCCaAGGUGGCCGGggCa -3'
miRNA:   3'- -UGCUGCuGCa-CGG-UCUGCUGGCCuaG- -5'
19038 5' -56.6 NC_004684.1 + 54348 0.66 0.703401
Target:  5'- cGCGGCGGuggagauguuggcaaGUGCCGGG-GGCgGGGUCg -3'
miRNA:   3'- -UGCUGCUg--------------CACGGUCUgCUGgCCUAG- -5'
19038 5' -56.6 NC_004684.1 + 55331 0.66 0.702356
Target:  5'- cGCGcuCGGCG-GCCAGGCGAgCCGccuccugcuGGUCg -3'
miRNA:   3'- -UGCu-GCUGCaCGGUCUGCU-GGC---------CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.