miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 3' -62.6 NC_004684.1 + 8620 0.66 0.416416
Target:  5'- cCCGGuGCaccGGCACCGccgauccuCGGCACCCc -3'
miRNA:   3'- -GGCC-CG---CCGUGGUccau----GCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 59513 0.66 0.416416
Target:  5'- aCCGGGCGcgucguaggccuGCGCaCAGGUccugcaccgccaGCGcGCGCCg- -3'
miRNA:   3'- -GGCCCGC------------CGUG-GUCCA------------UGC-CGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 24499 0.66 0.41466
Target:  5'- -gGGGCGGUGCCgcAGGgccgcgcguucgGCGGUGCCa- -3'
miRNA:   3'- ggCCCGCCGUGG--UCCa-----------UGCCGUGGgu -5'
19040 3' -62.6 NC_004684.1 + 16808 0.66 0.407681
Target:  5'- gUGGGCGcgccauucGCGCCAGGUucaaaGCGGguCgCCGc -3'
miRNA:   3'- gGCCCGC--------CGUGGUCCA-----UGCCguG-GGU- -5'
19040 3' -62.6 NC_004684.1 + 54103 0.66 0.407681
Target:  5'- uCCGacGGCGcGCACCAGccacCGGCGgCCAc -3'
miRNA:   3'- -GGC--CCGC-CGUGGUCcau-GCCGUgGGU- -5'
19040 3' -62.6 NC_004684.1 + 25560 0.66 0.407681
Target:  5'- cUCGGcGCGGUGgaAGGUGCGcUACCCGg -3'
miRNA:   3'- -GGCC-CGCCGUggUCCAUGCcGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 32669 0.66 0.407681
Target:  5'- gCCuGGCGGCGgCAuGGcUACGGC-CUCGg -3'
miRNA:   3'- -GGcCCGCCGUgGU-CC-AUGCCGuGGGU- -5'
19040 3' -62.6 NC_004684.1 + 15028 0.66 0.406814
Target:  5'- gCUGGGaCGGCACCAucgagucGGUGCuGCuggAUCCGa -3'
miRNA:   3'- -GGCCC-GCCGUGGU-------CCAUGcCG---UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 28082 0.66 0.40422
Target:  5'- gCCGGGCcgccgcgcgacccGCACCGGGUgguGCGGUucgagGCCUu -3'
miRNA:   3'- -GGCCCGc------------CGUGGUCCA---UGCCG-----UGGGu -5'
19040 3' -62.6 NC_004684.1 + 64852 0.66 0.399063
Target:  5'- gCGGGUGGUugUggugggGGGUGCGcguuguccggucGCGCCCc -3'
miRNA:   3'- gGCCCGCCGugG------UCCAUGC------------CGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 25583 0.66 0.399063
Target:  5'- uCCGGGUGGU-CCAcgaagaacgucGGcguCGGCACCUg -3'
miRNA:   3'- -GGCCCGCCGuGGU-----------CCau-GCCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 55168 0.66 0.399063
Target:  5'- gUCGGGCGGCAC---GUAcCGGaACCCGg -3'
miRNA:   3'- -GGCCCGCCGUGgucCAU-GCCgUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 9209 0.66 0.390561
Target:  5'- gUGGGCGcGUgACCGGGUG-GGCcaggACCCGa -3'
miRNA:   3'- gGCCCGC-CG-UGGUCCAUgCCG----UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 9794 0.66 0.390561
Target:  5'- gCCGaGGCccuGCGCCGG---UGGCACCCGa -3'
miRNA:   3'- -GGC-CCGc--CGUGGUCcauGCCGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 65106 0.66 0.390561
Target:  5'- aCCGcgucGUGGC-CCAGGcugGCGGCaauGCCCGc -3'
miRNA:   3'- -GGCc---CGCCGuGGUCCa--UGCCG---UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 23976 0.66 0.390561
Target:  5'- gCCGGGCcucGGguUCGGcgGCGGCgACCCGu -3'
miRNA:   3'- -GGCCCG---CCguGGUCcaUGCCG-UGGGU- -5'
19040 3' -62.6 NC_004684.1 + 6776 0.66 0.390561
Target:  5'- aUGGGCGacguGCGCCGGGUGacCGGCcuGCgCAc -3'
miRNA:   3'- gGCCCGC----CGUGGUCCAU--GCCG--UGgGU- -5'
19040 3' -62.6 NC_004684.1 + 21249 0.66 0.389718
Target:  5'- gCGaGGUGuucguGCGCCAGGUcaaccaccccggcACGcGCGCCCGg -3'
miRNA:   3'- gGC-CCGC-----CGUGGUCCA-------------UGC-CGUGGGU- -5'
19040 3' -62.6 NC_004684.1 + 29791 0.67 0.382179
Target:  5'- aUGGGCGGCcggGCCcgcacGGUACcgaugccgGGCACCUc -3'
miRNA:   3'- gGCCCGCCG---UGGu----CCAUG--------CCGUGGGu -5'
19040 3' -62.6 NC_004684.1 + 36479 0.67 0.382179
Target:  5'- -aGuGCGGCACCGGGUucgacauCGGCAaggCCGg -3'
miRNA:   3'- ggCcCGCCGUGGUCCAu------GCCGUg--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.