miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 5' -57.3 NC_004684.1 + 66670 0.67 0.613683
Target:  5'- --cGGuCACCGGCgguGCCCAGgucuucCCACc -3'
miRNA:   3'- ccaCCuGUGGCCG---UGGGUCaa----GGUGa -5'
19040 5' -57.3 NC_004684.1 + 36316 0.67 0.603026
Target:  5'- cGGUGGACcaacaacucGCCGGUGCCgCAGUgggUgUACg -3'
miRNA:   3'- -CCACCUG---------UGGCCGUGG-GUCA---AgGUGa -5'
19040 5' -57.3 NC_004684.1 + 19029 0.67 0.603026
Target:  5'- gGGUuGGCACCGGCGgCCGGgcaggUCAUg -3'
miRNA:   3'- -CCAcCUGUGGCCGUgGGUCaa---GGUGa -5'
19040 5' -57.3 NC_004684.1 + 43293 0.67 0.603025
Target:  5'- --cGGGCugCGGCACCUugaAGUUCgGg- -3'
miRNA:   3'- ccaCCUGugGCCGUGGG---UCAAGgUga -5'
19040 5' -57.3 NC_004684.1 + 66456 0.67 0.601961
Target:  5'- gGGUGGcggcguugucuccACGCCGcCACCCGGUggCgGCUa -3'
miRNA:   3'- -CCACC-------------UGUGGCcGUGGGUCAa-GgUGA- -5'
19040 5' -57.3 NC_004684.1 + 54392 0.67 0.59133
Target:  5'- cGGgGGACAuaauccacccggcCCGGCGCUCGGUguugccugCCGCc -3'
miRNA:   3'- -CCaCCUGU-------------GGCCGUGGGUCAa-------GGUGa -5'
19040 5' -57.3 NC_004684.1 + 59784 0.67 0.589207
Target:  5'- --cGGGCACCGGaugaaguacacgacCACCgGGUUgCCGCg -3'
miRNA:   3'- ccaCCUGUGGCC--------------GUGGgUCAA-GGUGa -5'
19040 5' -57.3 NC_004684.1 + 6569 0.67 0.58179
Target:  5'- cGGUGaGuCcguguCCGGCACCUGGUacgCCACg -3'
miRNA:   3'- -CCAC-CuGu----GGCCGUGGGUCAa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 9556 0.68 0.571227
Target:  5'- gGGcGGGUACCGGCGgCCAGcaCCGCc -3'
miRNA:   3'- -CCaCCUGUGGCCGUgGGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 49981 0.68 0.560711
Target:  5'- -cUGuGCACCGGCACaCCA--UCCACa -3'
miRNA:   3'- ccACcUGUGGCCGUG-GGUcaAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 1306 0.68 0.560711
Target:  5'- --cGcGugGCCGGaCAUgCGGUUCCACg -3'
miRNA:   3'- ccaC-CugUGGCC-GUGgGUCAAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 46337 0.68 0.550249
Target:  5'- cGGUcaGCACCGGCACCCG--UgCACg -3'
miRNA:   3'- -CCAccUGUGGCCGUGGGUcaAgGUGa -5'
19040 5' -57.3 NC_004684.1 + 19832 0.68 0.539848
Target:  5'- cGUGuGACGgCGGCGCaugCCGGUUgCCGCg -3'
miRNA:   3'- cCAC-CUGUgGCCGUG---GGUCAA-GGUGa -5'
19040 5' -57.3 NC_004684.1 + 51500 0.68 0.529514
Target:  5'- --gGGACGCCcugcGGCugCaCAGggCCGCUg -3'
miRNA:   3'- ccaCCUGUGG----CCGugG-GUCaaGGUGA- -5'
19040 5' -57.3 NC_004684.1 + 1643 0.68 0.529514
Target:  5'- --cGGGUACCGGCGCCCAaGUggggCCAg- -3'
miRNA:   3'- ccaCCUGUGGCCGUGGGU-CAa---GGUga -5'
19040 5' -57.3 NC_004684.1 + 33488 0.68 0.529514
Target:  5'- cGGUGGACGCggCGGCGgCCCuGUaCuCGCg -3'
miRNA:   3'- -CCACCUGUG--GCCGU-GGGuCAaG-GUGa -5'
19040 5' -57.3 NC_004684.1 + 63448 0.68 0.529514
Target:  5'- cGUGGuCGCCuucGcCGCCCAGUUCCGg- -3'
miRNA:   3'- cCACCuGUGGc--C-GUGGGUCAAGGUga -5'
19040 5' -57.3 NC_004684.1 + 52594 0.68 0.519254
Target:  5'- cGGUGGACAgCGcGCcgccguaguuguGCgCCAGUacgUCCACg -3'
miRNA:   3'- -CCACCUGUgGC-CG------------UG-GGUCA---AGGUGa -5'
19040 5' -57.3 NC_004684.1 + 31891 0.68 0.519254
Target:  5'- uGGUGGACGCCGGgACgUug-UUCGCg -3'
miRNA:   3'- -CCACCUGUGGCCgUGgGucaAGGUGa -5'
19040 5' -57.3 NC_004684.1 + 7518 0.68 0.519254
Target:  5'- gGGUGGACcugcCCGGCACCgAccuggCCGCc -3'
miRNA:   3'- -CCACCUGu---GGCCGUGGgUcaa--GGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.