miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19042 3' -64.1 NC_004684.1 + 28056 0.66 0.351422
Target:  5'- aGUGGGCGg-CCaACCg-GCCuGGGCGCGg -3'
miRNA:   3'- -CGUCCGCgaGG-UGGagCGG-CCCGCGU- -5'
19042 3' -64.1 NC_004684.1 + 60499 0.66 0.351422
Target:  5'- cGCAGGCGCaCCagguugacgACCUCGCCccagagccaGUGCAg -3'
miRNA:   3'- -CGUCCGCGaGG---------UGGAGCGGcc-------CGCGU- -5'
19042 3' -64.1 NC_004684.1 + 3888 0.66 0.351422
Target:  5'- cCAGGcCGC-CCugCUgGCgCaGGCGCAg -3'
miRNA:   3'- cGUCC-GCGaGGugGAgCG-GcCCGCGU- -5'
19042 3' -64.1 NC_004684.1 + 2446 0.66 0.343635
Target:  5'- cCGGGC-CaCCGCC-CGCCaGGCGCu -3'
miRNA:   3'- cGUCCGcGaGGUGGaGCGGcCCGCGu -5'
19042 3' -64.1 NC_004684.1 + 43265 0.66 0.343635
Target:  5'- aGCGGGUacgGCUgCugCgucggcgUGCCGGGCuGCGg -3'
miRNA:   3'- -CGUCCG---CGAgGugGa------GCGGCCCG-CGU- -5'
19042 3' -64.1 NC_004684.1 + 67136 0.66 0.343635
Target:  5'- cGCAGGCuguuggcgaucaGCUCgguguUACCgCGCCGGGgGUu -3'
miRNA:   3'- -CGUCCG------------CGAG-----GUGGaGCGGCCCgCGu -5'
19042 3' -64.1 NC_004684.1 + 64650 0.66 0.343635
Target:  5'- --uGGCGCaCCGCgaUGUCGGcGCGCAg -3'
miRNA:   3'- cguCCGCGaGGUGgaGCGGCC-CGCGU- -5'
19042 3' -64.1 NC_004684.1 + 24173 0.66 0.343635
Target:  5'- cGCAGGCGgUgCCGCCgcccaaaaUGCCGGuGCcuGCGg -3'
miRNA:   3'- -CGUCCGCgA-GGUGGa-------GCGGCC-CG--CGU- -5'
19042 3' -64.1 NC_004684.1 + 19754 0.66 0.343635
Target:  5'- uGCAGuaccuGCGCggccugCCgguGCC-CGCCGGGgGCGa -3'
miRNA:   3'- -CGUC-----CGCGa-----GG---UGGaGCGGCCCgCGU- -5'
19042 3' -64.1 NC_004684.1 + 28283 0.66 0.335972
Target:  5'- cGCAGGCGUaCCcggUCaCCGGGUGCGu -3'
miRNA:   3'- -CGUCCGCGaGGuggAGcGGCCCGCGU- -5'
19042 3' -64.1 NC_004684.1 + 25995 0.66 0.335972
Target:  5'- cGCuGGCGCUCCugGCggCgGCCGGGUuCAa -3'
miRNA:   3'- -CGuCCGCGAGG--UGgaG-CGGCCCGcGU- -5'
19042 3' -64.1 NC_004684.1 + 22423 0.66 0.335972
Target:  5'- cGCuGGGC-CUCaaCGCCaUCGCCGucGGCGCGg -3'
miRNA:   3'- -CG-UCCGcGAG--GUGG-AGCGGC--CCGCGU- -5'
19042 3' -64.1 NC_004684.1 + 39542 0.66 0.335972
Target:  5'- uGCAGGC-CUaauCCUCGCCGGacaGCAc -3'
miRNA:   3'- -CGUCCGcGAgguGGAGCGGCCcg-CGU- -5'
19042 3' -64.1 NC_004684.1 + 53823 0.66 0.335972
Target:  5'- uGCGGGCGUgcgCUuCCagGCUGGaGUGCAa -3'
miRNA:   3'- -CGUCCGCGa--GGuGGagCGGCC-CGCGU- -5'
19042 3' -64.1 NC_004684.1 + 18206 0.66 0.335972
Target:  5'- aGCAGGcCGCcgCCGCCgccgcCGCCGagacuGCGCc -3'
miRNA:   3'- -CGUCC-GCGa-GGUGGa----GCGGCc----CGCGu -5'
19042 3' -64.1 NC_004684.1 + 65866 0.66 0.328436
Target:  5'- cGCGGGuCGCgucgUCGCCguugaGCgCGGcGCGCAg -3'
miRNA:   3'- -CGUCC-GCGa---GGUGGag---CG-GCC-CGCGU- -5'
19042 3' -64.1 NC_004684.1 + 16026 0.66 0.328436
Target:  5'- -aAGGC-CU-CACCUCGguggaCUGGGCGCAg -3'
miRNA:   3'- cgUCCGcGAgGUGGAGC-----GGCCCGCGU- -5'
19042 3' -64.1 NC_004684.1 + 20685 0.66 0.328436
Target:  5'- cGguGGCGCg----CUCGCacaGGGCGCGc -3'
miRNA:   3'- -CguCCGCGaggugGAGCGg--CCCGCGU- -5'
19042 3' -64.1 NC_004684.1 + 5794 0.66 0.328436
Target:  5'- uGCGGGCGggaCGCCUCGaccaCCGaGGCGUc -3'
miRNA:   3'- -CGUCCGCgagGUGGAGC----GGC-CCGCGu -5'
19042 3' -64.1 NC_004684.1 + 54382 0.66 0.326199
Target:  5'- cCGGGCGCgucgggggacauaaUCCACC-CgGCCcGGCGCu -3'
miRNA:   3'- cGUCCGCG--------------AGGUGGaG-CGGcCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.