miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19042 5' -52.4 NC_004684.1 + 36384 0.66 0.908022
Target:  5'- cCGgucgGCGu-CAGGCCCAGcUGcgCCAUc -3'
miRNA:   3'- -GCa---UGCuuGUCCGGGUCcAUuaGGUG- -5'
19042 5' -52.4 NC_004684.1 + 43979 0.66 0.908022
Target:  5'- cCGUgcGCGGGCGuacccGGCcagcugcguuggCCAGGUcAUCCACg -3'
miRNA:   3'- -GCA--UGCUUGU-----CCG------------GGUCCAuUAGGUG- -5'
19042 5' -52.4 NC_004684.1 + 65461 0.66 0.901268
Target:  5'- cCGUGCGccgguacCAGGCCCggcAGGccgGGUCCGg -3'
miRNA:   3'- -GCAUGCuu-----GUCCGGG---UCCa--UUAGGUg -5'
19042 5' -52.4 NC_004684.1 + 21560 0.66 0.901268
Target:  5'- gGUcaaGGACGuGGCCgAGGUAGaCCACc -3'
miRNA:   3'- gCAug-CUUGU-CCGGgUCCAUUaGGUG- -5'
19042 5' -52.4 NC_004684.1 + 39265 0.66 0.89424
Target:  5'- gCGUGCGuGCAGGCCaccagcaAGGccucGAaCCGCa -3'
miRNA:   3'- -GCAUGCuUGUCCGGg------UCCa---UUaGGUG- -5'
19042 5' -52.4 NC_004684.1 + 26543 0.66 0.89424
Target:  5'- --gGCGGuCAGGCCgGGGUGua-CGCg -3'
miRNA:   3'- gcaUGCUuGUCCGGgUCCAUuagGUG- -5'
19042 5' -52.4 NC_004684.1 + 16151 0.66 0.89424
Target:  5'- gCGUGCGGcaucgaccgGCcgauGGCCaAGGUGAUCCuGCu -3'
miRNA:   3'- -GCAUGCU---------UGu---CCGGgUCCAUUAGG-UG- -5'
19042 5' -52.4 NC_004684.1 + 55471 0.66 0.886943
Target:  5'- --aGCGGAC-GGCCCuggcugucGGUGGUgCCGCg -3'
miRNA:   3'- gcaUGCUUGuCCGGGu-------CCAUUA-GGUG- -5'
19042 5' -52.4 NC_004684.1 + 21606 0.66 0.886943
Target:  5'- --cGCGAACAGGUCUAcgaccGGUA--CCGCa -3'
miRNA:   3'- gcaUGCUUGUCCGGGU-----CCAUuaGGUG- -5'
19042 5' -52.4 NC_004684.1 + 21418 0.66 0.879381
Target:  5'- aCG-ACGAACuGGCCgAGGUcaugGAggCCGCc -3'
miRNA:   3'- -GCaUGCUUGuCCGGgUCCA----UUa-GGUG- -5'
19042 5' -52.4 NC_004684.1 + 54895 0.66 0.879381
Target:  5'- aCGUGCGGcACGaggcGGCCCuGGUGG-CCGa -3'
miRNA:   3'- -GCAUGCU-UGU----CCGGGuCCAUUaGGUg -5'
19042 5' -52.4 NC_004684.1 + 48627 0.66 0.879381
Target:  5'- cCGUGCGccucuuccCAGGCCCAGaUGcgCUGCa -3'
miRNA:   3'- -GCAUGCuu------GUCCGGGUCcAUuaGGUG- -5'
19042 5' -52.4 NC_004684.1 + 40512 0.66 0.871561
Target:  5'- gGUugACGcGCAcGCCCAGGUuGUCgGCg -3'
miRNA:   3'- gCA--UGCuUGUcCGGGUCCAuUAGgUG- -5'
19042 5' -52.4 NC_004684.1 + 62676 0.66 0.871561
Target:  5'- uGggUGAACucGCCCAGGUGGaaaucggCCACg -3'
miRNA:   3'- gCauGCUUGucCGGGUCCAUUa------GGUG- -5'
19042 5' -52.4 NC_004684.1 + 41780 0.67 0.86349
Target:  5'- gCGUACGGACGcGG-CCAGGUG--CCGa -3'
miRNA:   3'- -GCAUGCUUGU-CCgGGUCCAUuaGGUg -5'
19042 5' -52.4 NC_004684.1 + 50223 0.67 0.855173
Target:  5'- gGUGCcGAACAcGCgCAGGUAcucGUCCAg -3'
miRNA:   3'- gCAUG-CUUGUcCGgGUCCAU---UAGGUg -5'
19042 5' -52.4 NC_004684.1 + 5402 0.67 0.855173
Target:  5'- uGUGCGcGGCGGGUgCGGGUGGcUCAUg -3'
miRNA:   3'- gCAUGC-UUGUCCGgGUCCAUUaGGUG- -5'
19042 5' -52.4 NC_004684.1 + 18838 0.67 0.846619
Target:  5'- --gGCGcGCAGGCCgAGGUGuggcaggagGUCgGCa -3'
miRNA:   3'- gcaUGCuUGUCCGGgUCCAU---------UAGgUG- -5'
19042 5' -52.4 NC_004684.1 + 64546 0.67 0.837836
Target:  5'- --cAgGAACccguGGUCCAGGUGcucAUCCACc -3'
miRNA:   3'- gcaUgCUUGu---CCGGGUCCAU---UAGGUG- -5'
19042 5' -52.4 NC_004684.1 + 63736 0.68 0.81021
Target:  5'- cCGUACGAugAcccGGCaCCGGGcgg-CCACu -3'
miRNA:   3'- -GCAUGCUugU---CCG-GGUCCauuaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.