Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 29491 | 0.67 | 0.717448 |
Target: 5'- -cAUCAGGuugUCGAUGCCGUUGU--UGAg -3' miRNA: 3'- ccUAGUCC---AGCUGCGGCAACGccACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 28733 | 1.11 | 0.001117 |
Target: 5'- uGGAUCAGGUCGACGCCGUUGCGGUGAa -3' miRNA: 3'- -CCUAGUCCAGCUGCGGCAACGCCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 23710 | 0.66 | 0.797319 |
Target: 5'- cGGuGUCGGaccUCGACGCCG-UGUGGgcUGAg -3' miRNA: 3'- -CC-UAGUCc--AGCUGCGGCaACGCC--ACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 20985 | 0.68 | 0.706991 |
Target: 5'- cGGcgCAGGUCGGC-CCGauccUGCGGc-- -3' miRNA: 3'- -CCuaGUCCAGCUGcGGCa---ACGCCacu -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 18846 | 0.73 | 0.41863 |
Target: 5'- aGGUCGGGUCGugGUCGgUGaccgGGUGGc -3' miRNA: 3'- cCUAGUCCAGCugCGGCaACg---CCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 16783 | 0.7 | 0.557784 |
Target: 5'- gGGAcCAGGUgCGGCG-CGUcgUGUGGUGGg -3' miRNA: 3'- -CCUaGUCCA-GCUGCgGCA--ACGCCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 15067 | 0.77 | 0.248341 |
Target: 5'- cGGAUgAGGUCGACGgccuuaUCGgcGCGGUGGc -3' miRNA: 3'- -CCUAgUCCAGCUGC------GGCaaCGCCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 6845 | 0.7 | 0.557784 |
Target: 5'- cGGcgCgaAGGgCGACGCCGUgGUGGUGc -3' miRNA: 3'- -CCuaG--UCCaGCUGCGGCAaCGCCACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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