miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 25320 0.66 0.633615
Target:  5'- -uCgGCCCuGGCGGCguAUgGCGGCCu -3'
miRNA:   3'- auGgCGGGuCUGCCGacUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 2452 0.66 0.648687
Target:  5'- cACCGCCCgccAGGC-GCUcaccgccgccaccugGGUCGCcGCCa -3'
miRNA:   3'- aUGGCGGG---UCUGcCGA---------------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 52384 0.66 0.655139
Target:  5'- aGCCGaUCCAGGCGGC-GGUCagGCAGu- -3'
miRNA:   3'- aUGGC-GGGUCUGCCGaCUAG--CGUUgg -5'
19044 5' -57.1 NC_004684.1 + 43388 0.66 0.644382
Target:  5'- --aUGCCC-GACGGCccggagaacgGGUCGCcGCCg -3'
miRNA:   3'- augGCGGGuCUGCCGa---------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 28953 0.66 0.637922
Target:  5'- gACUGCCaCaaccuccgacuucgaGGugGaGCUGAgccugCGCGACCg -3'
miRNA:   3'- aUGGCGG-G---------------UCugC-CGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 42924 0.66 0.636845
Target:  5'- cGCCGCCaggugauacccuGACGGCgcuuguggcugcugUGGUUGUGGCCg -3'
miRNA:   3'- aUGGCGGgu----------CUGCCG--------------ACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 64533 0.66 0.633615
Target:  5'- --aCGCCCAG-CGGCUcg--GCGGCCu -3'
miRNA:   3'- augGCGGGUCuGCCGAcuagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15287 0.66 0.633615
Target:  5'- cACCaGCCC-GACguuuGGCUGG-CGCGACg -3'
miRNA:   3'- aUGG-CGGGuCUG----CCGACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 55762 0.66 0.676582
Target:  5'- aUGCCGacggUCAGGCGGCcGAcggccagcUCGguGCCg -3'
miRNA:   3'- -AUGGCg---GGUCUGCCGaCU--------AGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 1591 0.66 0.665876
Target:  5'- cACCuGCCCGGugcACGGCaucGGUCGcCGugCg -3'
miRNA:   3'- aUGG-CGGGUC---UGCCGa--CUAGC-GUugG- -5'
19044 5' -57.1 NC_004684.1 + 3652 0.66 0.633615
Target:  5'- gGCCGCCCGGugcCGGgUcAUCGUAcggugGCCc -3'
miRNA:   3'- aUGGCGGGUCu--GCCgAcUAGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 15154 0.67 0.612084
Target:  5'- cGCCGCUguGgcaccACGGcCUGAUCGacGCCg -3'
miRNA:   3'- aUGGCGGguC-----UGCC-GACUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 23856 0.67 0.622846
Target:  5'- cACCGUUCGGA-GGUgg--CGCAGCCa -3'
miRNA:   3'- aUGGCGGGUCUgCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 43692 0.67 0.621769
Target:  5'- cGCCGCCCAGGuuggaGGCcacgcucUGGUCcgggcCGACCa -3'
miRNA:   3'- aUGGCGGGUCUg----CCG-------ACUAGc----GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 7103 0.67 0.612084
Target:  5'- gGCCGCCgAGGaccgGGCca--CGCAACCg -3'
miRNA:   3'- aUGGCGGgUCUg---CCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 35661 0.67 0.60134
Target:  5'- gGCCGUCgGcGGCGGUguGUCGCcACCg -3'
miRNA:   3'- aUGGCGGgU-CUGCCGacUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 23422 0.67 0.590621
Target:  5'- --aCGCCCGcGcACGGCUGAUgCuCGGCCu -3'
miRNA:   3'- augGCGGGU-C-UGCCGACUA-GcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 919 0.67 0.590621
Target:  5'- aGCCGCCaccggguGGCGGCgugGAgacaaCGCcGCCa -3'
miRNA:   3'- aUGGCGGgu-----CUGCCGa--CUa----GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 23854 0.67 0.627153
Target:  5'- gGCCgagugggagGCCCAGugGgaggaggaccacaacGCUGGUCcCGACCg -3'
miRNA:   3'- aUGG---------CGGGUCugC---------------CGACUAGcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 11934 0.67 0.579935
Target:  5'- gGCCGUCCGc-UGGCcaUGGUCGcCAGCCu -3'
miRNA:   3'- aUGGCGGGUcuGCCG--ACUAGC-GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.