miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 27511 0.67 0.579935
Target:  5'- gGCgGgCCAGA-GGCUGGcaaggacgugCGCAGCCg -3'
miRNA:   3'- aUGgCgGGUCUgCCGACUa---------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15880 0.67 0.569291
Target:  5'- gGCCGCCa--GCGGCccugUGCAGCCg -3'
miRNA:   3'- aUGGCGGgucUGCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 144 0.67 0.566107
Target:  5'- cGCCaGCCCGGAaacgccggucgaacCGGUgaccggguUGGUCGgGACCa -3'
miRNA:   3'- aUGG-CGGGUCU--------------GCCG--------ACUAGCgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 22694 0.68 0.558696
Target:  5'- cAUgGCCCcGGCGGCgcagGA-CGUGGCCa -3'
miRNA:   3'- aUGgCGGGuCUGCCGa---CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 57122 0.68 0.557639
Target:  5'- gACCGCUggCAGcacuggcGCGGCUGGUuCGCcuCCa -3'
miRNA:   3'- aUGGCGG--GUC-------UGCCGACUA-GCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 706 0.68 0.558696
Target:  5'- aGCCGCCgguGGACGGCcUGG-CGCu-CCa -3'
miRNA:   3'- aUGGCGGg--UCUGCCG-ACUaGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 8172 0.68 0.548156
Target:  5'- gAUCGCCgGgGGCGcGCUGGgccaggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUa-----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 47237 0.68 0.527275
Target:  5'- cACCGCCuCGGgcgcgaggguaGCGGCUGcgCGgAACa -3'
miRNA:   3'- aUGGCGG-GUC-----------UGCCGACuaGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 17065 0.68 0.558696
Target:  5'- gGCCGCCCGccUGGCcGggCGC-ACCg -3'
miRNA:   3'- aUGGCGGGUcuGCCGaCuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 46578 0.68 0.558696
Target:  5'- aACUcaGCCCAGucgucGCGGCUGGcgUUGCGuGCCg -3'
miRNA:   3'- aUGG--CGGGUC-----UGCCGACU--AGCGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 54097 0.68 0.558696
Target:  5'- aGCUGCUCcGACGGCg---CGCAccaGCCa -3'
miRNA:   3'- aUGGCGGGuCUGCCGacuaGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 65770 0.68 0.537681
Target:  5'- cGCCGCgcgCCGGugGGC-GcgCGCAcggcgACCg -3'
miRNA:   3'- aUGGCG---GGUCugCCGaCuaGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 31873 0.68 0.537681
Target:  5'- aGCUGCCCGccGACGuGCUGGUgGacGCCg -3'
miRNA:   3'- aUGGCGGGU--CUGC-CGACUAgCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 29435 0.68 0.537681
Target:  5'- --gCGCCCGGACccGCUGG--GCGACCg -3'
miRNA:   3'- augGCGGGUCUGc-CGACUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 10693 0.68 0.537681
Target:  5'- aACgGUCgGGACGcGgUGGcUCGCAACCg -3'
miRNA:   3'- aUGgCGGgUCUGC-CgACU-AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 31109 0.68 0.536637
Target:  5'- cGCCGCgCAGGC-GCUGGaggaccuUgGCGACCu -3'
miRNA:   3'- aUGGCGgGUCUGcCGACU-------AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 21998 0.68 0.516944
Target:  5'- cGCCaggGUCCGGugGaGCUGGUCaGCAucgACCu -3'
miRNA:   3'- aUGG---CGGGUCugC-CGACUAG-CGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 13090 0.68 0.558696
Target:  5'- aGCCGCCaAGGgGGCcGAUgCGCGcACCc -3'
miRNA:   3'- aUGGCGGgUCUgCCGaCUA-GCGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 36744 0.68 0.527275
Target:  5'- cGCCGUCCcGGC-GCUGA-CGCcGCCa -3'
miRNA:   3'- aUGGCGGGuCUGcCGACUaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 65328 0.68 0.516944
Target:  5'- gGCCaGCgCCAGGCaGGCcacGAUgGCGGCCc -3'
miRNA:   3'- aUGG-CG-GGUCUG-CCGa--CUAgCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.