miRNA display CGI


Results 101 - 120 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 8172 0.68 0.548156
Target:  5'- gAUCGCCgGgGGCGcGCUGGgccaggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUa-----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 57122 0.68 0.557639
Target:  5'- gACCGCUggCAGcacuggcGCGGCUGGUuCGCcuCCa -3'
miRNA:   3'- aUGGCGG--GUC-------UGCCGACUA-GCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 22694 0.68 0.558696
Target:  5'- cAUgGCCCcGGCGGCgcagGA-CGUGGCCa -3'
miRNA:   3'- aUGgCGGGuCUGCCGa---CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 31109 0.68 0.536637
Target:  5'- cGCCGCgCAGGC-GCUGGaggaccuUgGCGACCu -3'
miRNA:   3'- aUGGCGgGUCUGcCGACU-------AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 39201 0.68 0.534551
Target:  5'- cACCGCCCAGAaggggucgggguacCGcucGCUGAUCuuGCGcGCCg -3'
miRNA:   3'- aUGGCGGGUCU--------------GC---CGACUAG--CGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 47237 0.68 0.527275
Target:  5'- cACCGCCuCGGgcgcgaggguaGCGGCUGcgCGgAACa -3'
miRNA:   3'- aUGGCGG-GUC-----------UGCCGACuaGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 36744 0.68 0.527275
Target:  5'- cGCCGUCCcGGC-GCUGA-CGCcGCCa -3'
miRNA:   3'- aUGGCGGGuCUGcCGACUaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 65328 0.68 0.516944
Target:  5'- gGCCaGCgCCAGGCaGGCcacGAUgGCGGCCc -3'
miRNA:   3'- aUGG-CG-GGUCUG-CCGa--CUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63508 0.68 0.516944
Target:  5'- --gCGCCagcaGGGCGGcCUGGcgUCGCAGCUc -3'
miRNA:   3'- augGCGGg---UCUGCC-GACU--AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 40990 0.68 0.527275
Target:  5'- aGCgCGCCgGuGGCGGCguuggccaGAUCGCcGCCg -3'
miRNA:   3'- aUG-GCGGgU-CUGCCGa-------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 51006 0.68 0.516944
Target:  5'- gACCGCCCGGuagcugccCuGCUGGUCcaccggcaggauGCGGCCa -3'
miRNA:   3'- aUGGCGGGUCu-------GcCGACUAG------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 13720 0.69 0.466632
Target:  5'- -cCCGaCCCAGGC-GCUGucgGUCGguGCCa -3'
miRNA:   3'- auGGC-GGGUCUGcCGAC---UAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 9918 0.69 0.476499
Target:  5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3'
miRNA:   3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 20001 0.69 0.486469
Target:  5'- gUGCCgcGCCCAGAaGGCUGGcucagCGCcacuACCg -3'
miRNA:   3'- -AUGG--CGGGUCUgCCGACUa----GCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 65655 0.69 0.476499
Target:  5'- gACCGCCCucGGugGuGgUGAggUCGCGGCa -3'
miRNA:   3'- aUGGCGGG--UCugC-CgACU--AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 45261 0.69 0.466632
Target:  5'- aUGCCGCgCUGGACGcGCUGA--GCuGCCa -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGACUagCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 34144 0.69 0.456872
Target:  5'- cGCCGCCuCGGGCGGCacGGUgcUGCucACCg -3'
miRNA:   3'- aUGGCGG-GUCUGCCGa-CUA--GCGu-UGG- -5'
19044 5' -57.1 NC_004684.1 + 42908 0.69 0.456872
Target:  5'- cACCGCCCcGGCGGUaGcgCGCuGAUCu -3'
miRNA:   3'- aUGGCGGGuCUGCCGaCuaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 28925 0.69 0.456872
Target:  5'- gUGCCuGCCUuGuCGGCgUGAUCGC-GCCg -3'
miRNA:   3'- -AUGG-CGGGuCuGCCG-ACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 40866 0.69 0.455902
Target:  5'- gACCGCCCAGGCGcgacacgucagcGgUGGUCaGCAcgugcucGCCa -3'
miRNA:   3'- aUGGCGGGUCUGC------------CgACUAG-CGU-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.