miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 17557 0.71 0.365863
Target:  5'- gACCGCCUGGACGaGgUGcgCGCAcuguaaggugcACCg -3'
miRNA:   3'- aUGGCGGGUCUGC-CgACuaGCGU-----------UGG- -5'
19044 5' -57.1 NC_004684.1 + 7543 0.71 0.349222
Target:  5'- gGCCGCCguGGCGGCguucUGGuUCGCcuacACCg -3'
miRNA:   3'- aUGGCGGguCUGCCG----ACU-AGCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 12235 0.71 0.349222
Target:  5'- gUGCCGCCC-GACGGCggcGAUC-CggUCa -3'
miRNA:   3'- -AUGGCGGGuCUGCCGa--CUAGcGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 19450 0.71 0.349222
Target:  5'- cGCCcauGCCCGGGCGGCggUGGcccgCGCGACa -3'
miRNA:   3'- aUGG---CGGGUCUGCCG--ACUa---GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 33116 0.71 0.374386
Target:  5'- cGCCGCCCuugcuGACGGUggccugCGCAGuCCa -3'
miRNA:   3'- aUGGCGGGu----CUGCCGacua--GCGUU-GG- -5'
19044 5' -57.1 NC_004684.1 + 57944 0.7 0.409798
Target:  5'- gACCGCCUgcGGugcucgcuGCGGCUGGUgCGCAcgcugcugGCCg -3'
miRNA:   3'- aUGGCGGG--UC--------UGCCGACUA-GCGU--------UGG- -5'
19044 5' -57.1 NC_004684.1 + 60754 0.7 0.398062
Target:  5'- gGCCGCCgGGugGGggUUGGUCaggacuugaagaugGCGACCa -3'
miRNA:   3'- aUGGCGGgUCugCC--GACUAG--------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 7560 0.7 0.400751
Target:  5'- gACCGgcCCCGGguggcgcugguGCGGCUGGUgCGCGGCa -3'
miRNA:   3'- aUGGC--GGGUC-----------UGCCGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 1255 0.7 0.400751
Target:  5'- gGCCccgGCCCAGAUGcGCUGGcUgGUGGCCa -3'
miRNA:   3'- aUGG---CGGGUCUGC-CGACU-AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27683 0.7 0.437687
Target:  5'- cACCGaCCCGucCGG-UGAUUGCGGCCu -3'
miRNA:   3'- aUGGC-GGGUcuGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 58255 0.7 0.447222
Target:  5'- cUGCCGCgCCgAGGCGGUcGAaCGguACCg -3'
miRNA:   3'- -AUGGCG-GG-UCUGCCGaCUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 42868 0.7 0.447222
Target:  5'- cACCGCCgUAGAUGGCaccgccGAacgCGCGGCCc -3'
miRNA:   3'- aUGGCGG-GUCUGCCGa-----CUa--GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 56778 0.7 0.400751
Target:  5'- --aCGCC--GACGGCUGGUC-CAACCu -3'
miRNA:   3'- augGCGGguCUGCCGACUAGcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 29651 0.7 0.428269
Target:  5'- aACCGCCaacGACGuGCuccUGcgCGCGGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CG---ACuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 3937 0.7 0.437687
Target:  5'- aUGCCGgaaCUGGGCGGC-GAagGCGACCa -3'
miRNA:   3'- -AUGGCg--GGUCUGCCGaCUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 43827 0.7 0.418972
Target:  5'- cGCgGCCCGG-CaGGCUGuccaggcCGCGACCg -3'
miRNA:   3'- aUGgCGGGUCuG-CCGACua-----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26052 0.7 0.437687
Target:  5'- gGCCuugGCCCGGccguCGGC-GGUCGCGguGCCg -3'
miRNA:   3'- aUGG---CGGGUCu---GCCGaCUAGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 4013 0.7 0.437687
Target:  5'- cGCCGCCau--CGGCUGG-CGCGucgGCCg -3'
miRNA:   3'- aUGGCGGgucuGCCGACUaGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 49527 0.7 0.447222
Target:  5'- cUugCGCUCAGGCGGCgugcggucggUGA-CGCAcACCu -3'
miRNA:   3'- -AugGCGGGUCUGCCG----------ACUaGCGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 9918 0.69 0.476499
Target:  5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3'
miRNA:   3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.