miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 18338 0.69 0.496537
Target:  5'- gUGCCGCCCccGGAgccgacCGGCgGcgCGguGCCg -3'
miRNA:   3'- -AUGGCGGG--UCU------GCCGaCuaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 30600 0.69 0.493506
Target:  5'- cGCCGCCCGcguGugGGCguucuucgagggagUGAcCGCGACg -3'
miRNA:   3'- aUGGCGGGU---CugCCG--------------ACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 8525 0.69 0.486469
Target:  5'- --aCGCCagcaAGucGCGGCUGAUCgGCAACg -3'
miRNA:   3'- augGCGGg---UC--UGCCGACUAG-CGUUGg -5'
19044 5' -57.1 NC_004684.1 + 45238 0.69 0.476499
Target:  5'- gUGCUGgUCAGGCccggcagccaGcGCUGGUCGCGGCCc -3'
miRNA:   3'- -AUGGCgGGUCUG----------C-CGACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 11523 0.69 0.486469
Target:  5'- cACCGCUCGGugGGcCUGGgccacaUcgacccgcccCGCAACCa -3'
miRNA:   3'- aUGGCGGGUCugCC-GACU------A----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26407 0.69 0.476499
Target:  5'- cGCCGCCaccGGCGcGCUGGcagcgggguUCGCcGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CGACU---------AGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 5788 0.69 0.486469
Target:  5'- cUACUGCgCCAGGCGuGCgaGGUCGgGACg -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGa-CUAGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 2870 0.69 0.486469
Target:  5'- -gUCGCgCCGGACGaccuGCUGGUgCGCAACa -3'
miRNA:   3'- auGGCG-GGUCUGC----CGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 13264 0.69 0.496537
Target:  5'- gACCGCCa--GCGcGCUGGUgGCcGCCg -3'
miRNA:   3'- aUGGCGGgucUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 13720 0.69 0.466632
Target:  5'- -cCCGaCCCAGGC-GCUGucgGUCGguGCCa -3'
miRNA:   3'- auGGC-GGGUCUGcCGAC---UAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 9918 0.69 0.476499
Target:  5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3'
miRNA:   3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 34144 0.69 0.456872
Target:  5'- cGCCGCCuCGGGCGGCacGGUgcUGCucACCg -3'
miRNA:   3'- aUGGCGG-GUCUGCCGa-CUA--GCGu-UGG- -5'
19044 5' -57.1 NC_004684.1 + 24774 0.69 0.456872
Target:  5'- gACCgGCaCCGGGCcGCUGGUCGauaCGGCCa -3'
miRNA:   3'- aUGG-CG-GGUCUGcCGACUAGC---GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 28925 0.69 0.456872
Target:  5'- gUGCCuGCCUuGuCGGCgUGAUCGC-GCCg -3'
miRNA:   3'- -AUGG-CGGGuCuGCCG-ACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 30177 0.69 0.506697
Target:  5'- cGCCGUCgGcGGCGaGCUGGUgGCcACCa -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 12816 0.69 0.505677
Target:  5'- gACgCGCCCGaggacGGCGGCucugcugccgacgUGGUCGCGgagGCCg -3'
miRNA:   3'- aUG-GCGGGU-----CUGCCG-------------ACUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 12755 0.69 0.496537
Target:  5'- cGCCcucuugGCCCGcGCGGCUGcgCcuGCGGCCa -3'
miRNA:   3'- aUGG------CGGGUcUGCCGACuaG--CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 49201 0.69 0.496537
Target:  5'- gGCCuGCUCGGuCGGCcagucGGUCGguGCCg -3'
miRNA:   3'- aUGG-CGGGUCuGCCGa----CUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 33876 0.69 0.496537
Target:  5'- gGCCuaCCAGGCGGUgcgGG-CGguGCCg -3'
miRNA:   3'- aUGGcgGGUCUGCCGa--CUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 40866 0.69 0.455902
Target:  5'- gACCGCCCAGGCGcgacacgucagcGgUGGUCaGCAcgugcucGCCa -3'
miRNA:   3'- aUGGCGGGUCUGC------------CgACUAG-CGU-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.