miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 33876 0.69 0.496537
Target:  5'- gGCCuaCCAGGCGGUgcgGG-CGguGCCg -3'
miRNA:   3'- aUGGcgGGUCUGCCGa--CUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 18338 0.69 0.496537
Target:  5'- gUGCCGCCCccGGAgccgacCGGCgGcgCGguGCCg -3'
miRNA:   3'- -AUGGCGGG--UCU------GCCGaCuaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 13264 0.69 0.496537
Target:  5'- gACCGCCa--GCGcGCUGGUgGCcGCCg -3'
miRNA:   3'- aUGGCGGgucUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 30600 0.69 0.493506
Target:  5'- cGCCGCCCGcguGugGGCguucuucgagggagUGAcCGCGACg -3'
miRNA:   3'- aUGGCGGGU---CugCCG--------------ACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 8525 0.69 0.486469
Target:  5'- --aCGCCagcaAGucGCGGCUGAUCgGCAACg -3'
miRNA:   3'- augGCGGg---UC--UGCCGACUAG-CGUUGg -5'
19044 5' -57.1 NC_004684.1 + 5788 0.69 0.486469
Target:  5'- cUACUGCgCCAGGCGuGCgaGGUCGgGACg -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGa-CUAGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 2870 0.69 0.486469
Target:  5'- -gUCGCgCCGGACGaccuGCUGGUgCGCAACa -3'
miRNA:   3'- auGGCG-GGUCUGC----CGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 42908 0.69 0.456872
Target:  5'- cACCGCCCcGGCGGUaGcgCGCuGAUCu -3'
miRNA:   3'- aUGGCGGGuCUGCCGaCuaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 10693 0.68 0.537681
Target:  5'- aACgGUCgGGACGcGgUGGcUCGCAACCg -3'
miRNA:   3'- aUGgCGGgUCUGC-CgACU-AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 706 0.68 0.558696
Target:  5'- aGCCGCCgguGGACGGCcUGG-CGCu-CCa -3'
miRNA:   3'- aUGGCGGg--UCUGCCG-ACUaGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 22694 0.68 0.558696
Target:  5'- cAUgGCCCcGGCGGCgcagGA-CGUGGCCa -3'
miRNA:   3'- aUGgCGGGuCUGCCGa---CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 57122 0.68 0.557639
Target:  5'- gACCGCUggCAGcacuggcGCGGCUGGUuCGCcuCCa -3'
miRNA:   3'- aUGGCGG--GUC-------UGCCGACUA-GCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 51006 0.68 0.516944
Target:  5'- gACCGCCCGGuagcugccCuGCUGGUCcaccggcaggauGCGGCCa -3'
miRNA:   3'- aUGGCGGGUCu-------GcCGACUAG------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63508 0.68 0.516944
Target:  5'- --gCGCCagcaGGGCGGcCUGGcgUCGCAGCUc -3'
miRNA:   3'- augGCGGg---UCUGCC-GACU--AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 8172 0.68 0.548156
Target:  5'- gAUCGCCgGgGGCGcGCUGGgccaggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUa-----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 65770 0.68 0.537681
Target:  5'- cGCCGCgcgCCGGugGGC-GcgCGCAcggcgACCg -3'
miRNA:   3'- aUGGCG---GGUCugCCGaCuaGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 31873 0.68 0.537681
Target:  5'- aGCUGCCCGccGACGuGCUGGUgGacGCCg -3'
miRNA:   3'- aUGGCGGGU--CUGC-CGACUAgCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 29435 0.68 0.537681
Target:  5'- --gCGCCCGGACccGCUGG--GCGACCg -3'
miRNA:   3'- augGCGGGUCUGc-CGACUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 31109 0.68 0.536637
Target:  5'- cGCCGCgCAGGC-GCUGGaggaccuUgGCGACCu -3'
miRNA:   3'- aUGGCGgGUCUGcCGACU-------AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 39201 0.68 0.534551
Target:  5'- cACCGCCCAGAaggggucgggguacCGcucGCUGAUCuuGCGcGCCg -3'
miRNA:   3'- aUGGCGGGUCU--------------GC---CGACUAG--CGU-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.