Results 41 - 60 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 22733 | 0.71 | 0.383043 |
Target: 5'- cGCCGCCgCAGcaGCGGgUGA-CGCAguggGCCg -3' miRNA: 3'- aUGGCGG-GUC--UGCCgACUaGCGU----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 871 | 0.71 | 0.383043 |
Target: 5'- -cCCGCCgGGcCGcGCUGAagGCGGCCc -3' miRNA: 3'- auGGCGGgUCuGC-CGACUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 57734 | 0.71 | 0.383043 |
Target: 5'- gGCaCGCCCAGGCGGCaGcugCGCAGu- -3' miRNA: 3'- aUG-GCGGGUCUGCCGaCua-GCGUUgg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 23531 | 0.71 | 0.391832 |
Target: 5'- aGCCuGCUCAccaaccucGGCGGCaucGGUCGCGGCCu -3' miRNA: 3'- aUGG-CGGGU--------CUGCCGa--CUAGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 15514 | 0.71 | 0.394494 |
Target: 5'- gGCCGCCCggggccgggcgcuGGAgGcGCUGAUCcgcguugguggaccgGCGACCa -3' miRNA: 3'- aUGGCGGG-------------UCUgC-CGACUAG---------------CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 60754 | 0.7 | 0.398062 |
Target: 5'- gGCCGCCgGGugGGggUUGGUCaggacuugaagaugGCGACCa -3' miRNA: 3'- aUGGCGGgUCugCC--GACUAG--------------CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 56778 | 0.7 | 0.400751 |
Target: 5'- --aCGCC--GACGGCUGGUC-CAACCu -3' miRNA: 3'- augGCGGguCUGCCGACUAGcGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 7560 | 0.7 | 0.400751 |
Target: 5'- gACCGgcCCCGGguggcgcugguGCGGCUGGUgCGCGGCa -3' miRNA: 3'- aUGGC--GGGUC-----------UGCCGACUA-GCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 1255 | 0.7 | 0.400751 |
Target: 5'- gGCCccgGCCCAGAUGcGCUGGcUgGUGGCCa -3' miRNA: 3'- aUGG---CGGGUCUGC-CGACU-AgCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 57944 | 0.7 | 0.409798 |
Target: 5'- gACCGCCUgcGGugcucgcuGCGGCUGGUgCGCAcgcugcugGCCg -3' miRNA: 3'- aUGGCGGG--UC--------UGCCGACUA-GCGU--------UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 43827 | 0.7 | 0.418972 |
Target: 5'- cGCgGCCCGG-CaGGCUGuccaggcCGCGACCg -3' miRNA: 3'- aUGgCGGGUCuG-CCGACua-----GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 29651 | 0.7 | 0.428269 |
Target: 5'- aACCGCCaacGACGuGCuccUGcgCGCGGCCg -3' miRNA: 3'- aUGGCGGgu-CUGC-CG---ACuaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 26052 | 0.7 | 0.437687 |
Target: 5'- gGCCuugGCCCGGccguCGGC-GGUCGCGguGCCg -3' miRNA: 3'- aUGG---CGGGUCu---GCCGaCUAGCGU--UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 3937 | 0.7 | 0.437687 |
Target: 5'- aUGCCGgaaCUGGGCGGC-GAagGCGACCa -3' miRNA: 3'- -AUGGCg--GGUCUGCCGaCUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 4013 | 0.7 | 0.437687 |
Target: 5'- cGCCGCCau--CGGCUGG-CGCGucgGCCg -3' miRNA: 3'- aUGGCGGgucuGCCGACUaGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 27683 | 0.7 | 0.437687 |
Target: 5'- cACCGaCCCGucCGG-UGAUUGCGGCCu -3' miRNA: 3'- aUGGC-GGGUcuGCCgACUAGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 42868 | 0.7 | 0.447222 |
Target: 5'- cACCGCCgUAGAUGGCaccgccGAacgCGCGGCCc -3' miRNA: 3'- aUGGCGG-GUCUGCCGa-----CUa--GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 49527 | 0.7 | 0.447222 |
Target: 5'- cUugCGCUCAGGCGGCgugcggucggUGA-CGCAcACCu -3' miRNA: 3'- -AugGCGGGUCUGCCG----------ACUaGCGU-UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 58255 | 0.7 | 0.447222 |
Target: 5'- cUGCCGCgCCgAGGCGGUcGAaCGguACCg -3' miRNA: 3'- -AUGGCG-GG-UCUGCCGaCUaGCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 40866 | 0.69 | 0.455902 |
Target: 5'- gACCGCCCAGGCGcgacacgucagcGgUGGUCaGCAcgugcucGCCa -3' miRNA: 3'- aUGGCGGGUCUGC------------CgACUAG-CGU-------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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