miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 24774 0.69 0.456872
Target:  5'- gACCgGCaCCGGGCcGCUGGUCGauaCGGCCa -3'
miRNA:   3'- aUGG-CG-GGUCUGcCGACUAGC---GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 34144 0.69 0.456872
Target:  5'- cGCCGCCuCGGGCGGCacGGUgcUGCucACCg -3'
miRNA:   3'- aUGGCGG-GUCUGCCGa-CUA--GCGu-UGG- -5'
19044 5' -57.1 NC_004684.1 + 42908 0.69 0.456872
Target:  5'- cACCGCCCcGGCGGUaGcgCGCuGAUCu -3'
miRNA:   3'- aUGGCGGGuCUGCCGaCuaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 28925 0.69 0.456872
Target:  5'- gUGCCuGCCUuGuCGGCgUGAUCGC-GCCg -3'
miRNA:   3'- -AUGG-CGGGuCuGCCG-ACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 3891 0.69 0.456872
Target:  5'- gGCCGCCCuGcUGGCgcaggCGCAGCUg -3'
miRNA:   3'- aUGGCGGGuCuGCCGacua-GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 3769 0.69 0.466632
Target:  5'- gACCGCgaaCAGGCGaaGCUGAUgGCGuCCg -3'
miRNA:   3'- aUGGCGg--GUCUGC--CGACUAgCGUuGG- -5'
19044 5' -57.1 NC_004684.1 + 13720 0.69 0.466632
Target:  5'- -cCCGaCCCAGGC-GCUGucgGUCGguGCCa -3'
miRNA:   3'- auGGC-GGGUCUGcCGAC---UAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 45261 0.69 0.466632
Target:  5'- aUGCCGCgCUGGACGcGCUGA--GCuGCCa -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGACUagCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 45125 0.69 0.466632
Target:  5'- gGCCGCcgCCAGGCGGUcccaUGcUCGC-GCCu -3'
miRNA:   3'- aUGGCG--GGUCUGCCG----ACuAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 65655 0.69 0.476499
Target:  5'- gACCGCCCucGGugGuGgUGAggUCGCGGCa -3'
miRNA:   3'- aUGGCGGG--UCugC-CgACU--AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 9918 0.69 0.476499
Target:  5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3'
miRNA:   3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 45238 0.69 0.476499
Target:  5'- gUGCUGgUCAGGCccggcagccaGcGCUGGUCGCGGCCc -3'
miRNA:   3'- -AUGGCgGGUCUG----------C-CGACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26407 0.69 0.476499
Target:  5'- cGCCGCCaccGGCGcGCUGGcagcgggguUCGCcGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CGACU---------AGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 30986 0.69 0.476499
Target:  5'- cACCGUUgAGAC-GCUGAUggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgUCUGcCGACUA--GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 20001 0.69 0.486469
Target:  5'- gUGCCgcGCCCAGAaGGCUGGcucagCGCcacuACCg -3'
miRNA:   3'- -AUGG--CGGGUCUgCCGACUa----GCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 2870 0.69 0.486469
Target:  5'- -gUCGCgCCGGACGaccuGCUGGUgCGCAACa -3'
miRNA:   3'- auGGCG-GGUCUGC----CGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 5788 0.69 0.486469
Target:  5'- cUACUGCgCCAGGCGuGCgaGGUCGgGACg -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGa-CUAGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 8525 0.69 0.486469
Target:  5'- --aCGCCagcaAGucGCGGCUGAUCgGCAACg -3'
miRNA:   3'- augGCGGg---UC--UGCCGACUAG-CGUUGg -5'
19044 5' -57.1 NC_004684.1 + 11523 0.69 0.486469
Target:  5'- cACCGCUCGGugGGcCUGGgccacaUcgacccgcccCGCAACCa -3'
miRNA:   3'- aUGGCGGGUCugCC-GACU------A----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 30600 0.69 0.493506
Target:  5'- cGCCGCCCGcguGugGGCguucuucgagggagUGAcCGCGACg -3'
miRNA:   3'- aUGGCGGGU---CugCCG--------------ACUaGCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.