miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 12755 0.69 0.496537
Target:  5'- cGCCcucuugGCCCGcGCGGCUGcgCcuGCGGCCa -3'
miRNA:   3'- aUGG------CGGGUcUGCCGACuaG--CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 42380 0.69 0.496537
Target:  5'- aGCUGCaCCGG-C-GCUGAgCGCGACCg -3'
miRNA:   3'- aUGGCG-GGUCuGcCGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 33876 0.69 0.496537
Target:  5'- gGCCuaCCAGGCGGUgcgGG-CGguGCCg -3'
miRNA:   3'- aUGGcgGGUCUGCCGa--CUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 18338 0.69 0.496537
Target:  5'- gUGCCGCCCccGGAgccgacCGGCgGcgCGguGCCg -3'
miRNA:   3'- -AUGGCGGG--UCU------GCCGaCuaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 13264 0.69 0.496537
Target:  5'- gACCGCCa--GCGcGCUGGUgGCcGCCg -3'
miRNA:   3'- aUGGCGGgucUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 49201 0.69 0.496537
Target:  5'- gGCCuGCUCGGuCGGCcagucGGUCGguGCCg -3'
miRNA:   3'- aUGG-CGGGUCuGCCGa----CUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 12816 0.69 0.505677
Target:  5'- gACgCGCCCGaggacGGCGGCucugcugccgacgUGGUCGCGgagGCCg -3'
miRNA:   3'- aUG-GCGGGU-----CUGCCG-------------ACUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 30177 0.69 0.506697
Target:  5'- cGCCGUCgGcGGCGaGCUGGUgGCcACCa -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 51006 0.68 0.516944
Target:  5'- gACCGCCCGGuagcugccCuGCUGGUCcaccggcaggauGCGGCCa -3'
miRNA:   3'- aUGGCGGGUCu-------GcCGACUAG------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63508 0.68 0.516944
Target:  5'- --gCGCCagcaGGGCGGcCUGGcgUCGCAGCUc -3'
miRNA:   3'- augGCGGg---UCUGCC-GACU--AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 65328 0.68 0.516944
Target:  5'- gGCCaGCgCCAGGCaGGCcacGAUgGCGGCCc -3'
miRNA:   3'- aUGG-CG-GGUCUG-CCGa--CUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 21998 0.68 0.516944
Target:  5'- cGCCaggGUCCGGugGaGCUGGUCaGCAucgACCu -3'
miRNA:   3'- aUGG---CGGGUCugC-CGACUAG-CGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 47892 0.68 0.521067
Target:  5'- gUGCCGucccaCCCAGcaGCGGCUGGcuccaggggcgcaugUCGCGcggGCCa -3'
miRNA:   3'- -AUGGC-----GGGUC--UGCCGACU---------------AGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 36744 0.68 0.527275
Target:  5'- cGCCGUCCcGGC-GCUGA-CGCcGCCa -3'
miRNA:   3'- aUGGCGGGuCUGcCGACUaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 47237 0.68 0.527275
Target:  5'- cACCGCCuCGGgcgcgaggguaGCGGCUGcgCGgAACa -3'
miRNA:   3'- aUGGCGG-GUC-----------UGCCGACuaGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 24869 0.68 0.527275
Target:  5'- cGCCGaCCAcGGCGGUgagcgcgccguUGAUCGCGuugGCCu -3'
miRNA:   3'- aUGGCgGGU-CUGCCG-----------ACUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 40990 0.68 0.527275
Target:  5'- aGCgCGCCgGuGGCGGCguuggccaGAUCGCcGCCg -3'
miRNA:   3'- aUG-GCGGgU-CUGCCGa-------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 39201 0.68 0.534551
Target:  5'- cACCGCCCAGAaggggucgggguacCGcucGCUGAUCuuGCGcGCCg -3'
miRNA:   3'- aUGGCGGGUCU--------------GC---CGACUAG--CGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 31109 0.68 0.536637
Target:  5'- cGCCGCgCAGGC-GCUGGaggaccuUgGCGACCu -3'
miRNA:   3'- aUGGCGgGUCUGcCGACU-------AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 10693 0.68 0.537681
Target:  5'- aACgGUCgGGACGcGgUGGcUCGCAACCg -3'
miRNA:   3'- aUGgCGGgUCUGC-CgACU-AGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.