Results 101 - 120 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 29435 | 0.68 | 0.537681 |
Target: 5'- --gCGCCCGGACccGCUGG--GCGACCg -3' miRNA: 3'- augGCGGGUCUGc-CGACUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 31873 | 0.68 | 0.537681 |
Target: 5'- aGCUGCCCGccGACGuGCUGGUgGacGCCg -3' miRNA: 3'- aUGGCGGGU--CUGC-CGACUAgCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 65770 | 0.68 | 0.537681 |
Target: 5'- cGCCGCgcgCCGGugGGC-GcgCGCAcggcgACCg -3' miRNA: 3'- aUGGCG---GGUCugCCGaCuaGCGU-----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 9141 | 0.68 | 0.537681 |
Target: 5'- gACCGCCuCGGcGCGGCaGGUgCgGCAACUg -3' miRNA: 3'- aUGGCGG-GUC-UGCCGaCUA-G-CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 40175 | 0.68 | 0.537681 |
Target: 5'- aGCgGCCCgaugAGAaGGCUcugGAUCGCAccGCCg -3' miRNA: 3'- aUGgCGGG----UCUgCCGA---CUAGCGU--UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 47416 | 0.68 | 0.547106 |
Target: 5'- gUGCCuGCUgGaggugguGGgGGUUGAUCGCGGCCa -3' miRNA: 3'- -AUGG-CGGgU-------CUgCCGACUAGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 8172 | 0.68 | 0.548156 |
Target: 5'- gAUCGCCgGgGGCGcGCUGGgccaggCGCAGCUg -3' miRNA: 3'- aUGGCGGgU-CUGC-CGACUa-----GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 41865 | 0.68 | 0.548156 |
Target: 5'- cACCGaCCCGGcguCGGC-GGUCGagaaCAGCCg -3' miRNA: 3'- aUGGC-GGGUCu--GCCGaCUAGC----GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 54171 | 0.68 | 0.548156 |
Target: 5'- -cCCGCCauuGAucUGGCUGGUCGCccgcucgauuucAGCCa -3' miRNA: 3'- auGGCGGgu-CU--GCCGACUAGCG------------UUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 57122 | 0.68 | 0.557639 |
Target: 5'- gACCGCUggCAGcacuggcGCGGCUGGUuCGCcuCCa -3' miRNA: 3'- aUGGCGG--GUC-------UGCCGACUA-GCGuuGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 22694 | 0.68 | 0.558696 |
Target: 5'- cAUgGCCCcGGCGGCgcagGA-CGUGGCCa -3' miRNA: 3'- aUGgCGGGuCUGCCGa---CUaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 46578 | 0.68 | 0.558696 |
Target: 5'- aACUcaGCCCAGucgucGCGGCUGGcgUUGCGuGCCg -3' miRNA: 3'- aUGG--CGGGUC-----UGCCGACU--AGCGU-UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 13090 | 0.68 | 0.558696 |
Target: 5'- aGCCGCCaAGGgGGCcGAUgCGCGcACCc -3' miRNA: 3'- aUGGCGGgUCUgCCGaCUA-GCGU-UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 17065 | 0.68 | 0.558696 |
Target: 5'- gGCCGCCCGccUGGCcGggCGC-ACCg -3' miRNA: 3'- aUGGCGGGUcuGCCGaCuaGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 706 | 0.68 | 0.558696 |
Target: 5'- aGCCGCCgguGGACGGCcUGG-CGCu-CCa -3' miRNA: 3'- aUGGCGGg--UCUGCCG-ACUaGCGuuGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 54097 | 0.68 | 0.558696 |
Target: 5'- aGCUGCUCcGACGGCg---CGCAccaGCCa -3' miRNA: 3'- aUGGCGGGuCUGCCGacuaGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 144 | 0.67 | 0.566107 |
Target: 5'- cGCCaGCCCGGAaacgccggucgaacCGGUgaccggguUGGUCGgGACCa -3' miRNA: 3'- aUGG-CGGGUCU--------------GCCG--------ACUAGCgUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 10150 | 0.67 | 0.569291 |
Target: 5'- gUGCCGCCCgcccaggugGGGCguuuguccggcaGGCUGAgcaccaUCGCGccGCCg -3' miRNA: 3'- -AUGGCGGG---------UCUG------------CCGACU------AGCGU--UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 15880 | 0.67 | 0.569291 |
Target: 5'- gGCCGCCa--GCGGCccugUGCAGCCg -3' miRNA: 3'- aUGGCGGgucUGCCGacuaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 58337 | 0.67 | 0.569291 |
Target: 5'- gGCgCGCCCGGugGcccuGCUGG-CGUuGCCg -3' miRNA: 3'- aUG-GCGGGUCugC----CGACUaGCGuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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